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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttgactattgattagttgtagttgtaattaatcctcgctcttttcccgtgataacggtacgtcagtatcgattcaatttttccacccccttttgtttaacttggtggttgtatgtttgtgctagACATGGAATGCTTTGTCCACAGGAACATGTACTAGGACACTCCGTCAACACTCAGATTATGTTACTTGCCTTGCTGTGGCAGAAAAAAAT

Basic information

species Glycine max
transcript GLYMA10G30050.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 4
gttcgttgactattgattagttgtagttgtaattaatcctcgctcttttcccgtgataac-ggtacgtcagtatcgattcaatttttccacccccttttgtttaacttggtggttgtatgtttgtgctagACATGGAATGCTTTGTCCACAGGAACATGTACTAGGACACTCCGTCAACACTCAGATTATGTTACTTGCCTTGCTGTGGCAGAAAAAAAT
                                    |  ||  | |    || | ||    |||   | |   |      ||| |    |      ||   |||  |   |  |||      |   | |||| ||||||   |||||    ||||| ||||| ||||| |||||||||||||| || ||||||||||| || ||||  ||||||||||||
----------------------------------gtttgtcaatttgaatccatcattgttggttttttaacctatggaaaatctgattatttttattgacttatttcccttattgaga---tacaccagACCTGGAATTGCTTGTCTGATGGAACTTGTACCAGGACTCTCCGTCAACACTCTGACTATGTTACTTGTCTCGCTGCAGCAGAAAAAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcaatttttccacccccttttgtttaacttggtggttgtatgtttgtgctagACATGGAATGCTTTGTCCACAGGAACATGTACTAGGACACTCCGTCAACACTCAGATTATGTTACTTGCCTTGCTGTGGCAGAAAAAAAT
                        gtttaac  putative branch site (score: 3)
                    ttttgtttaa  TA-rich tract