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...tttgcgtcacattaaggatatatcacttgcactttatttgctggttatttgaaatttccattggatattttctgacactttttcttgatgacttacatagGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCGCCTTCTGATGAGTATTGGAAGAAGTCAAAGATGCCTAATGCTACTTTGTTTAAACCTCGAC
species | Glycine max |
transcript | GLYMA10G30030.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTTAGGAGAGTTATTGGCTGGGAAACCTATTTTGCCTGGCCGTACAGAG GTGGAACAACTGCATAAGATATACCAACTTTGTGGTTCGCCTTCTGATGAGEST: gi|207771393|gb|GD745276.1|GD745276
genomic: TTTTAGGAGAGTTATTGGCTGGGAAACCTATTTTGCCTGGTCGTACAGAGgtgaaaactt ... acttacatagGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCGCCTTCTGATGAG
EST: TTTTAGGAGAGTTATTGGCTGGGAAACCTATTTTGCCTGGTCGTACAGAG GTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCGCCTTCTGATGAGEST: gi|193536710|gb|FK490034.1|FK490034
genomic: TTTTAGGAGAGTTATTGGCTGGGAAACCTATTTTGCCTGGTCGTACAGAGgtgaaaactt ... acttacatagGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCGCCTTCTGATGAG
EST: TTTTAGGAGAGTTATTGGCTGGGAAACCTATTTTGCCTGGTCGTACAGAG GTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCGCCTTCTGATGAGEST: gi|9820068|gb|BE555581.1|BE555581
genomic: TTTTAGGAGAGTTATTGGCTGGGAAACCTATTTTGCCTGGTCGTACAGAGgtgaaaactt ... acttacatagGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCGCCTTCTGATGAG
EST: TTTTAGGAGAGTTATTGGCTGGGAAACCTATTTTGCCTGGTCGTACAGAG GTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCGCCTTCTGATGAG
genomic: TTTTAGGAGAGTTATTGGCTGGGAAACCTATTTTGCCTGGTCGTACAGAGgtgaaaactt ... acttacatagGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCGCCTTCTGATGAG
tatttgaaatttccattggatattttctgacactttttcttgatgacttacatagGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCGCCTTCTGATGAGTATTGGAAGAAGTCAAAGATGCCTAATGCTACTTTGTTTAAACCTCGAC
gacttac putative branch site (score: 2)
atattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgcgtcacattaaggatatatcacttgcactttatttgctggttatttgaaatttccattggatattttctgacactttttcttgatgacttacatagGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCGCCTTCTGATGAGTATTGGAAGAAGTCAAAGATGCCTAATGCTACTTTGTTTAAACCTCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - -cttgcac
- - - - - - - - - - - - - - - - - - - tgctggt