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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttattgttccaaattctcgtttgtttgttgtcattattttaggaggaagttaaagttaatttctgcacctgatacacgcttgaacgtttttatttctgttttgtttttgttttagaatgtgcattgttgtaattgtctctgaattgtgttttttttttttgcagCGGGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGTGTTGCGAAGTGTTTGTCCTGTGGCGTACTTCAGGCGGCATCCATTAATG

Basic information

species Glycine max
transcript GLYMA10G29360.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588541|gb|AW704264.1|AW704264
EST:     TTCAGCTGAAAGTTGTGCAGTTGAATAGTAACATGCTAGCTAATGACTTG                         CGGGCAGCATTGGCTGGACCTTCTGATATTTTGATCTCCACTCCTGCTTGT
genomic: TTCAGCTGAAAGTTGTGCAGTTGAATAGTAACATGCTTGCTAATGACTTGgttggttatt ... ttttttgcagCGGGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGT
EST: gi|23726946|gb|BU761485.1|BU761485
EST:     TTCAGCTGAAAGTTGTGCAGTTGAATAGTAACATGCTTGCTAATGACTTG                         CGGGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGT
genomic: TTCAGCTGAAAGTTGTGCAGTTGAATAGTAACATGCTTGCTAATGACTTGgttggttatt ... ttttttgcagCGGGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGT
EST: gi|208185495|gb|GD982008.1|GD982008
EST:     TTCAGCTGAAAGTTGTGCAGTTGAATAGTAACATGCTTGCTAATGACTTG                         CGGGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGT
genomic: TTCAGCTGAAAGTTGTGCAGTTGAATAGTAACATGCTTGCTAATGACTTGgttggttatt ... ttttttgcagCGGGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttagaatgtgcattgttgtaattgtctctgaattgtgttttttttttttgcagCGGGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGTGTTGCGAAGTGTTTGTCCTGTGGCGTACTTCAGGCGGCATCCATTAATG
                                  ttgtgttttttttttt  CT-rich tract
                              tgaattgtgttttttt  TA-rich tract