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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttatatatccccttttgatttgctgctctttcctgatgggtgcctttgatgttgtaaaacagctgatcttttgacatttgttgttctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGCTATTCTTACCTACAATAACACAAACCACTTGATAAAGAAGGATGTTCCT

Basic information

species Glycine max
transcript GLYMA10G28890.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g61670.1 (Oryza sativa), 3'ss of exon 3
gtgatttatatatccccttttgatttgctgctctttcctgatgggtgcctttgatgttgtaaaacagctgatcttttgacatttgttgttctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGCTATTCTTACCTACAATAACACAAACCACTTGATAAAGAAGGATGTTCCT
|||||   |  ||    |    | ||     ||    ||| || |  | ||| |    | || |    ||||   |     | | |||     |||||| || |||||||| |||||||||||||| ||    |||||||| ||||||||||| |||||  | ||   ||  |||||  | || |||||||| || || 
gtgatggtttaatttgatc---acttcgcattcccctctg-tgtgctcatttcagagcgcaacatctttgattgatcagtttcttttgaa--attgcagCATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGCTATCCTTACAAAGAACGGCAAGAACCATCTAATCAAGAAGGACGTGCCA

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G358059_T01 (Zea mays), 3'ss of exon 3
gtgatttatatatccccttttgatttgctgctctttcctgatgggtgcctttgatgttgtaaaacagctgatcttttgacatttgttgttctgt--tgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGCTATTCTTACCTACAATAACACAAACCACTTGATAAAGAAGGATGTTCCT
                   | || ||    |  | |  |   |       |   | |  ||   || ||  |  ||  |   |  || ||||||  ||||| ||||||||||| ||||||||||| || ||||| |||||||| |||||| |||| || ||| |  ||  ||  ||||||||||| ||||||||||| |||
------------------gtagactttgaacaatattgttgcgctccttctccctatcatatctcatcttgtacttgtaacctcattcttctgtactgcagCATTATGTTTGGACCAGATATCTGTGGGTACAGCACCAAGAAGGTTCACACTATCCTGACCAAGGATGGCAAGAACCACTTGATCAAGAAGGATGTGCCT

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G074687_T01 (Zea mays), 3'ss of exon 3
gtgatttatatatccccttttgatttgctgctctttcctgatgggtgcctttgatgttgtaaaacagctgatcttttgacatttgttgttctgt-tgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGCTATTCTTACCTACAATAACACAAACCACTTGATAAAGAAGGATGTTCCT
||    |||  ||    | |||   | ||  |  | |||      |     |||| |||||    ||  |     || || ||  || |||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||| |||||| |||| || ||  |  ||  ||  ||||||||||| ||||||||||| |||
gtagcctatggatatattcttg---tactttttctccctatcatat----ctgatcttgtag--tagtag-----ttaac-ttcattcttctgtatgcagCATTATGTTTGGACCAGATATCTGTGGGTACAGCACCAAGAAGGTTCACACTATCCTGACAAAGGATGGCAAGAACCACTTGATCAAGAAGGATGTGCCT

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G56340.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgatttatatatccccttttgatttgctgctctttcctgatgggtgcctttgatgttgtaaaacagctgatcttttgacatttgttgttctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGCTATTCTTACCTACAATAACACAAACCACTTGATAAAGAAGGATGTTCCT
                  | || ||| | | |  || |  ||     | |   |  ||   ||||| | |     ||  | ||  || ||    ||||| ||||||||||| |||||||| || || ||||| || |||||||| || ||||| ||||| ||||||   || ||||| ||||| |||||||| || || 
-----------------gtgtgtttttcggttactttcatatcaa-acttcaaacattc--aaacaccagg---cttatctttctttttttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCTATCCTTACTTACAATGGAACCAACCATTTGATCAAGAAGGAGGTCCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207757309|gb|GD729581.1|GD729581
EST:     ATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTCTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: ATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208229958|gb|GE023369.1|GE023369
EST:     GGCGGGGATACTCCTTACAG                         TATTATGTTTGG
genomic: GGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGG
EST: gi|193312975|gb|FK279588.1|FK279588
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCAC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCAC
EST: gi|33390215|gb|CA853422.1|CA853422
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|151398774|gb|EV268645.1|EV268645
EST:     TCAGTGGGGATGTTGATACAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: TCAGTGGGGATGTTGAT-CAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193706461|gb|FK648913.1|FK648913
EST:     CGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGGTACCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208109597|gb|GD906741.1|GD906741
EST:     GGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193330129|gb|FK293125.1|FK293125
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCCGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208252475|gb|GE048321.1|GE048321
EST:     GGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193666243|gb|FK610580.1|FK610580
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193704353|gb|FK644775.1|FK644775
EST:     GGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208227336|gb|GE026355.1|GE026355
EST:     GGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208335121|gb|GE129244.1|GE129244
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208106571|gb|GD905604.1|GD905604
EST:     GGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|7233127|gb|AW568477.1|AW568477
EST:     GATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|18692974|gb|BM521822.1|BM521822
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193392508|gb|FK360571.1|FK360571
EST:     GGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193306449|gb|FK273374.1|FK273374
EST:     GGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193618194|gb|FK570736.1|FK570736
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGG
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGG
EST: gi|193386952|gb|FK351249.1|FK351249
EST:     ATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: ATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193406036|gb|FK370893.1|FK370893
EST:     CAGTGGGGATGTTGATCAGAAGAAATTTTGGTCCGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CAGTGGGGATGTTGATCAGAAGAAA-TTTGG-CGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208212953|gb|GE014966.1|GE014966
EST:     CGGGGTATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CGGGG-ATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193471553|gb|FK434750.1|FK434750
EST:     GGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACAAAGAAAGTTCACGC
genomic: GGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208208746|gb|GE005970.1|GE005970
EST:     GGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACAAAGAAAGTTCACGC
genomic: GGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208208746|gb|GE005970.1|GE005970
EST:     GGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACAAAGAAAGTTCACGC
genomic: GGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|207716290|gb|GD698912.1|GD698912
EST:     GGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208095736|gb|GD894090.1|GD894090
EST:     GGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208095736|gb|GD894090.1|GD894090
EST:     GGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193472464|gb|FK438657.1|FK438657
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGT
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGT
EST: gi|207816882|gb|GD788423.1|GD788423
EST:     CGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGAATATCTGCGGTTACAGTACCAAGAAAGTTCACG
genomic: CGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAG-ATATCTGCGGTTACAGTACCAAGAAAGTTCACG
EST: gi|8827255|gb|BE210985.1|BE210985
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|120492727|gb|EH220894.1|EH220894
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208305534|gb|GE106987.1|GE106987
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193486050|gb|FK452181.1|FK452181
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|207775008|gb|GD747672.1|GD747672
EST:     CAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|207801954|gb|GD774738.1|GD774738
EST:     GGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193535857|gb|FK491239.1|FK491239
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208227848|gb|GE024598.1|GE024598
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208122609|gb|GD924953.1|GD924953
EST:     CAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTAACAAG                         TATTATGTTTGGCCC
genomic: CAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTA-CA-Ggtgatttata ... tctgttgcagTATTATGTTTGGCCC
EST: gi|193711797|gb|FK648764.1|FK648764
EST:     GGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|9900639|gb|BE609607.1|BE609607
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCATATATCTGCGGTTACAGTCCCA-GAAAG
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAG
EST: gi|208207440|gb|GE007207.1|GE007207
EST:     AAGAAATTTGGCGGGGATACCCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: AAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193530167|gb|FK486954.1|FK486954
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTAACCAAAGAAAGTTCAC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTA-CCAA-GAAAGTTCAC
EST: gi|5753695|gb|AI960982.1|AI960982
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCATATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193568202|gb|FK522985.1|FK522985
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|192334620|gb|FK025195.1|FK025195
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|8404295|gb|BE059929.1|BE059929
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208050768|gb|GD848035.1|GD848035
EST:     GATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193408218|gb|FK374952.1|FK374952
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAA
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAA
EST: gi|208220450|gb|GE017670.1|GE017670
EST:     AAGAAATTTGGCGGGGATACCCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: AAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193565870|gb|FK523673.1|FK523673
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208310632|gb|GE104228.1|GE104228
EST:     GGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|120493122|gb|EH221289.1|EH221289
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|208183858|gb|GD985748.1|GD985748
EST:     CGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193580808|gb|FK537289.1|FK537289
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCA
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCA
EST: gi|193306947|gb|FK268799.1|FK268799
EST:     ATGTTGATCAGAAGAAATTTGGCCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: ATGTTGATCAGAAGAAATTTGG-CGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193420590|gb|FK390093.1|FK390093
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCCGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
EST: gi|193707724|gb|FK646820.1|FK646820
EST:     CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTT
genomic: CTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTT
EST: gi|193346831|gb|FK312213.1|FK312213
EST:     GATCAGAAGAAATTTGGCGGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC
genomic: GATCAGAAGAAATTTGGC-GGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcctttgatgttgtaaaacagctgatcttttgacatttgttgttctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGCTATTCTTACCTACAATAACACAAACCACTTGATAAAGAAGGATGTTCCT
                             ttttgac  putative branch site (score: 3)
                                         ttgttct  putative PPT
            ttgtaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgatttatatatccccttttgatttgctgctctttcctgatgggtgcctttgatgttgtaaaacagctgatcttttgacatttgttgttctgttgcagTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGCTATTCTTACCTACAATAACACAAACCACTTGATAAAGAAGGATGTTCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG