1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatattccttaccaaaagtcttgtatatattttttgactcattcaaaactcagcatgacatttgatgtgtgccattttgtcatggaatttatttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAACATACAACTTTCAT
species | Glycine max |
transcript | GLYMA10G27570.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|21257025|gb|BQ453913.1|BQ453913
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACTAGATAEST: gi|192302214|gb|FG995838.1|FG995838
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|298169150|gb|HO020510.1|HO020510
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATEST: gi|6746805|gb|AW317261.1|AW317261
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGAT
EST: GTGGACATAGACAGCAGCAAATGAAGCTGCCCAG ATTATCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|193600186|gb|FK553423.1|FK553423
genomic: GTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGEST: gi|192302215|gb|FG995839.1|FG995839
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACG
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|298173651|gb|HO016987.1|HO016987
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|298179882|gb|HO025097.1|HO025097
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTGACGACAAGATAEST: gi|298176128|gb|HO015533.1|HO015533
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATEST: gi|209710301|gb|BW676363.1|BW676363
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGAT
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|208207730|gb|GE008057.1|GE008057
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAGGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|24136483|gb|BU926993.1|BU926993
genomic: AAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|192304887|gb|FG997069.1|FG997069
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|193409657|gb|FK375005.1|FK375005
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|298167914|gb|HO013177.1|HO013177
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAEST: gi|207795939|gb|GD767356.1|GD767356
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTAGGAAAGGAAAGTGGAAGGAAATCAEST: gi|298164873|gb|HO010870.1|HO010870
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATT-GGAA-GGAA-GTGGAAGGAAATCA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGAEST: gi|31464266|gb|CD406294.1|CD406294
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|209716295|gb|BW657598.1|BW657598
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|298174019|gb|HO017355.1|HO017355
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGEST: gi|151400105|gb|EV269919.1|EV269919
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGG
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|208130598|gb|GD930191.1|GD930191
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCAEST: gi|298177859|gb|HO027412.1|HO027412
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGEST: gi|298175984|gb|HO015389.1|HO015389
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTG
EST: AGGACAAACCTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|254339730|gb|GR857855.1|GR857855
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|192323520|gb|FK017101.1|FK017101
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|192329523|gb|FK022215.1|FK022215
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|298195261|gb|HO043789.1|HO043789
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGAEST: gi|151395269|gb|EV265140.1|EV265140
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|10238974|gb|BE807862.1|BE807862
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|192295702|gb|FG990556.1|FG990556
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|298195765|gb|HO044156.1|HO044156
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGEST: gi|254339729|gb|GR857854.1|GR857854
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGG
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|209710300|gb|BW676362.1|BW676362
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|192304888|gb|FG997070.1|FG997070
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|151409238|gb|EV279046.1|EV279046
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGG--G-AAGTGGAAGGAAATCATTGATGTTAACGACAAGATAEST: gi|192329522|gb|FK022214.1|FK022214
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
aaactcagcatgacatttgatgtgtgccattttgtcatggaatttatttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAACATACAACTTTCAT
atttgat putative branch site (score: 5)
tttattttt putative PPT
atggaatttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatattccttaccaaaagtcttgtatatattttttgactcattcaaaactcagcatgacatttgatgtgtgccattttgtcatggaatttatttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATAACATACAACTTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA