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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcacaatttaatcttcttcccttccttttagtttccccttatatttgaaaggatatatcgttatgactctgtcttcatatgtgcttcatttataaaaaaattcatccttgtgttcttaaatttgcaatggattttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAAAATGTACCATATCTTAACCGGTTGGGTACAATGCTCATTAACAACAACA

Basic information

species Glycine max
transcript GLYMA10G24350.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G24350.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os02g13990.3 (Oryza sativa), 3'ss of exon 2
gtgcacaatttaatcttcttcccttccttttagtttccccttatatttgaaaggatatatcgttatgactctgtcttcatatgtgcttcatttataaaaaaattcatccttgtgttcttaaatttgcaatggattttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAAAATGTACCATATCTTAACCGGTTGGGTACAATGCTCATTAACAACAACA
                               | |   |  |   |||| |     ||| |      |  | ||| ||  ||| | |||  | |  |  |   || |  ||| | ||  | | |||||       | ||    |||||||||| |||||||| ||||| || ||||||||||||||||| ||||| ||  | || ||  | || ||  | || ||  || |  ||||||| ||||
-------------------------------aatactcattctcatttcag----tatttgacccagcttttgttttattatcttctt--tctccagcatgtttaacacttctttttgttactttgc-------tctcaaatagGACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAGAACTTCCCGTACTTGAATCGTCTTGGCACTCTGTTAGTTAACAATAACA

upper sequence: GLYMA10G24350.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G021742_T01 (Zea mays), 3'ss of exon 2
gtgcacaatttaatcttcttcccttccttttagtttccccttatatttgaaaggatatatcgttatgactctgtcttcatatgtgcttcatttataaaaaaattcatccttgtgttcttaaatttgcaatggattttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAAAATGTACCATATCTTAACCGGTTGGGTACAATGCTCATTAACAACAACA
                             | | |||    |  |||||  || | ||| | ||| |     ||  ||| |        | ||  ||| |  ||  ||  |     |||                  ||   |||||||| || |||||||| ||||| || || |||||||||||||| ||||||||  | |||||  | || ||  | || ||  | ||  |||| || ||||
-----------------------gaatagtaaattttaaatcttatttagaatggtatttagttgt----ttgggttccttctctagcctttcttaacaccatctatattcactctctc-----------------tctaacagGACCAGTTTGACACAATTGACTTGTCGGATAATGAGATTGTCAAGCTTGAAAACTTCCCATACTTGAATCGTCTTGGCACTCTACTAGTTAATAATAACA

upper sequence: GLYMA10G24350.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0150g00590.t01 (Vitis vinifera), 3'ss of exon 2
gtgcacaatttaatcttcttcccttccttttagtttccccttatatttgaaaggatatatcgttatgactctgtcttcatatgtgcttcatttataaaaaaattcatccttgtgttcttaaatttgcaatggattttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAAAATGTACCATATCTTAACCGGTTGGGTACAATGCTCATTAACAACAACA
                                      | ||| | |||      |  ||     ||  |    |||| | |||  | || ||     ||  ||  | ||| ||  | | | |||   || |  |     |||||||||||| || || || || || |||||||||||||||||||| || |||||  | || |||||||| |||||||||||  |||| || |||||||| |
--------------------------------------ctttaaaattgtttcagtggatttacttgtttgcagcttcttgtgttttgcacttt----aatgttgttgcttttg--catgatttttatatcggctcattggcagGACCAATTTGATACCATTGATTTGTCTGACAATGAGATTGTCAAGCTCGAAAACTTGCCTTATCTTAATCGGTTGGGTACTTTGCTTATCAACAACAATA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016033|gb|CX702775.1|CX702775
EST:     GAGAACTTGGGTGTTACTGA-                         GACCAATTCGACACAATAGACTTATCTGACAATGAGA-TGNTCAAAC-TGA
genomic: GAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTG-TCAAACTTG-
EST: gi|27425309|gb|CA936829.1|CA936829
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|7926083|gb|AW832109.1|AW832109
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|192320515|gb|FK011925.1|FK011925
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATCGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|7691074|gb|AW759208.1|AW759208
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|13479182|gb|BG508525.1|BG508525
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|213618238|gb|DB973008.1|DB973008
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|16106162|gb|BI893902.1|BI893902
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|13791609|gb|BG654200.1|BG654200
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|192308052|gb|FG999035.1|FG999035
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|213595893|gb|DB966252.1|DB966252
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|10232355|gb|BE801243.1|BE801243
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|27446299|gb|CA953422.1|CA953422
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttataaaaaaattcatccttgtgttcttaaatttgcaatggattttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAAAATGTACCATATCTTAACCGGTTGGGTACAATGCTCATTAACAACAACA
                                            ttttcctgc  CT-rich tract
     taaaaaaattcat  TA-rich tract