1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgtacaacagcaaagcaaaatgaaagattagaatttcaggatactttagcattgtcctggaaatttacaattcagttgcttacttgttttctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAG
species | Glycine max |
transcript | GLYMA10G12350.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|151412912|gb|EV282724.1|EV282724
genomic: AGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|151396151|gb|EV266028.1|EV266028
genomic: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|41145363|gb|CK605574.1|CK605574
genomic: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|193395879|gb|FK364448.1|FK364448
genomic: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCTGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|298194691|gb|HO043163.1|HO043163
genomic: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|192323158|gb|FK017384.1|FK017384
genomic: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|151402844|gb|EV272657.1|EV272657
genomic: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|193556711|gb|FK511920.1|FK511920
genomic: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: GAAGAAAAACGGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGACT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATEST: gi|151407863|gb|EV277678.1|EV277678
genomic: GAAGAAAAAC-GGGCCGTTTATGATCAGACTGGTTTTGTTGATGATG-CTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAAT
EST: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|193479469|gb|FK444254.1|FK444254
genomic: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|16346108|gb|BI971703.1|BI971703
genomic: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: GACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|208101594|gb|GD899555.1|GD899555
genomic: GACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: TGAAGAAAAACGGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTT
genomic: TGAAGAAAAAC-GGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTT
ttagcattgtcctggaaatttacaattcagttgcttacttgttttctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAG
ttctaaa putative branch site (score: 2)
cttacttgttttct CT-rich tract
aaatttacaattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtacaacagcaaagcaaaatgaaagattagaatttcaggatactttagcattgtcctggaaatttacaattcagttgcttacttgttttctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG