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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactagcgagctaatgaagcaaagttacttcttggtagttattgttatctttttgtcttacacaccgttaatttgtttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGATTACGTCACCAATCAGATTACAAACTTTGTGATGAATAAAGTAAATAAGA

Basic information

species Glycine max
transcript GLYMA10G11610.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G11610.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G23890.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgactagcgagctaatgaagcaaagttacttcttggtagttattgttatcttttt--gtcttacacaccgttaatttgtttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGATTACGTCACCAATCAGATTACAAACTTTGTGATGAATAAAGTAAATAAGA
     ||   |  |  |         ||| || ||| | |||||    |     ||  ||||||   ||| ||  | || |  ||||||||||||||||| || ||||| || |||||||||||||| || |||||||| || || || | |||||||||||||  | |  ||  |   || || || |
----gtatgtatttggttggctgttattattttttg-ttgttatgaagaatgagttaagtcttaacaaccttt--tctgctgctaccagGTCAGCTTTGTCAACTCCATAGCAACAATCAAGGGTGGTACACATGTTGACTATGTGACGAGTCAGATTACAAACCATATTGTGGCTGCTGTGAACAAAA

upper sequence: GLYMA10G11610.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0064g00560.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------gtgactagcgagctaatgaagcaaagttacttcttggtagttattgttatctttttgtcttacacaccgttaatttgtttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGATTACGTCACCAATCAGATTACAAACTTTGTGATGAATAAAGTAAATAAGA
                             |   |   ||  ||||  ||||  |  |  |  |  |  || |    | |||    |  |  |    | | | | | ||| ||||||||||||| || |||   || || || ||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||| ||  || |||||||
gtaatactgagaaaagtttaaaccagaaatatattttgaattaatttagcagtgcaagctactatttcttttatgaaacttaacataatttatggggatgaat-gatttgaccagGTCAGCTTCGTAAATAGTATCGCCACGATCAAGGGTGGGACTCATGTTGATTACGTTACCAACCAGATTGCAAACTTTGTAATGAGTATTGTCAATAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193690347|gb|FK632684.1|FK632684
EST:     GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
genomic: GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAGgtgactagcg ... tttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
EST: gi|208063869|gb|GD864669.1|GD864669
EST:     GAAAGGTGGGAGATTTAGACGTGAGTCTAAGTGATGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
genomic: GAAAGGTGGGAGATTT-G-CGTGAGTCTAAGTGATGGGCAGTTTCAACAGgtgactagcg ... tttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
EST: gi|193516385|gb|FK476419.1|FK476419
EST:     GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGG-ACTCATGTTGAT
genomic: GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAGgtgactagcg ... tttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
EST: gi|193337171|gb|FK302467.1|FK302467
EST:     GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTGCTACAATCAAGGG
genomic: GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAGgtgactagcg ... tttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGG
EST: gi|207811802|gb|GD783051.1|GD783051
EST:     GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
genomic: GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAGgtgactagcg ... tttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
EST: gi|193641503|gb|FK593253.1|FK593253
EST:     GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
genomic: GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAGgtgactagcg ... tttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
EST: gi|193477133|gb|FK443088.1|FK443088
EST:     GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
genomic: GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAGgtgactagcg ... tttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
EST: gi|193645214|gb|FK593430.1|FK593430
EST:     TGAAAGGTGGGAGATTTGACGTGAGTCTAAGTGATGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
genomic: TGAAAGGTGGGAGATTTG-CGTGAGTCTAAGTGATGGGCAGTTTCAACAGgtgactagcg ... tttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
EST: gi|193403888|gb|FK366138.1|FK366138
EST:     GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
genomic: GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAGgtgactagcg ... tttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
EST: gi|193463850|gb|FK427830.1|FK427830
EST:     GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
genomic: GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAGgtgactagcg ... tttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
EST: gi|193389698|gb|FK355787.1|FK355787
EST:     GCGTGAGTCTAAGTGACGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
genomic: GCGTGAGTCTAAGTGATGGGCAGTTTCAACAGgtgactagcg ... tttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggtagttattgttatctttttgtcttacacaccgttaatttgtttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGATTACGTCACCAATCAGATTACAAACTTTGTGATGAATAAAGTAAATAAGA
                                         tttgttttt  CT-rich tract
        ttattgttatcttttt  TA-rich tract