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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttcccatgtttatttttagaaccaaaaggtgattaattagaataattacattactttgccaaatattgctagttagtggatgatcaatctcaaaattttatttgattttcatttctgattttactagaaagcttttatatgatttgcttttatgccagacttgaagttgatatattgatgtacatattcagGTTGAAGGAATCTTCAGAATTAATGCTGAAAATAGTCAAGAGGAGTTAGTAAGGGAACAATTAAATAGAGGGATTGTACCATATGGCATTGATGTGCACT

Basic information

species Glycine max
transcript GLYMA10G08610.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G08610.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G113073_T01 (Zea mays), 3'ss of exon 2
gtatatttcccatgtttatttttagaaccaaaaggtgattaattagaataattacattactttgccaaatattgctagttagtggatgatcaatctcaaaattttatttgattttcatttctgattttactagaaagcttttatatgatttgcttttatgccagacttgaagttgatatattgatgtacatattcagGTTGAAGGAATCTTCAGAATTAATGCTGAAAATAGTCAAGAGGAGTTAGTAAGGGAACAATTAAATAGAGGGATTGTACCATATGGCATTGATGTGCACT
                                                                             ||  ||   | ||  |||||  |   |  | ||||| | | | ||| |      ||      |||  | |  ||  || |    || |     |  || |   ||  | |  |   |||||  ||||| |||||| | || ||||| |||||||| || || ||||| || || || ||| ||||||| || ||||| ||| ||||||||||||| ||||
-----------------------------------------------------------------------------gtgtgtcttttat-gatctcctatcatcctatgattcttagt-ctgttgccgtcagtg----tttggaagccttatttctg-atcaaat----aagtgtttccttattttgtactgtcagGCAGAAGGTATCTTCCGTATAAATGCAGAAAATAGCCAGGAAGAGTTTGTGAGAGACCAACTAAATAGTGGAATTGTTCCAGATGGCATTGATGTCCACT

upper sequence: GLYMA10G08610.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g03140.t01 (Vitis vinifera), 3'ss of exon 2
gtatatttcccatgtttatttttagaaccaaaaggtgattaattagaataattacattactttgccaaatattgctagttagtggatgatcaatctcaaaattttatttgattttcatttctgattttactagaa-agcttttatatgatttg---cttttatgccagacttgaagttgatatattga-tgtacatattcagGTTGAAGGAATCTTCAGAATTAATGCTGAAAATAGTCAAGAGGAGTTAGTAAGGGAACAATTAAATAGAGGGATTGTACCATATGGCATTGATGTGCACT
                                                                                                      ||| | ||| ||   |||   | | |  ||    | |||||| ||    |    ||||        |   ||  |  |   |||||   || || | ||||  ||||| |||||||||||||||||||| ||| | ||||||||||  || || || || ||||| || ||  | || ||| ||| ||||||||||||||
------------------------------------------------------------------------------------------------------tttctgtgagttgggttttgcagtatcttaatgcaacttttagatcgcatcagtctttccaattttaacagagatctaaggattgaacttaaatgtacagGCAGAAGGGATCTTCAGAATTAATGCTGAGAATGGCCAAGAGGAGTATGTTAGAGACCAGTTAAACAGGGGAGTAGTCCCAGATGACATTGATGTGCACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgatttgcttttatgccagacttgaagttgatatattgatgtacatattcagGTTGAAGGAATCTTCAGAATTAATGCTGAAAATAGTCAAGAGGAGTTAGTAAGGGAACAATTAAATAGAGGGATTGTACCATATGGCATTGATGTGCACT
                                    tattgat  putative branch site (score: 3)
                              ttgatatatt  TA-rich tract