Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctccttggcattcatggcctgacctatttaactttttgtctggtcatatcagtcttaactgtgttttattgctatacacaagGGGTTCAGCTTCTGTTGGGGAAGATCACTTTTTTTCCATCTGGAGGAATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCCATAGGT

Basic information

species Glycine max
transcript GLYMA10G07610.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 2
gtgagcctccttggcattcatggcctgacctatttaactttttgtctggtcatatcagtcttaactgtgtttt-attgctatacacaagGGGTTCAGCTTCTGTTGGGGAAGATCACTTTTTTTCCATCTGGAGGAATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCCATAGGT
|||||  ||  |   ||   || | | |       ||   ||       ||||     |  |||   |||||| ||||| || |||||||||| |||||||   ||| |||||| ||||| ||||||||||| || | |||||| ||||||  || ||||| ||||||||| ||||  |||| || |||
gtgagt-tctctaaaatctttgtcataa-------aatccttgaaggaatcatgatt-ttgtaatcatgtttttattgccat-cacaagGGGTGCAGCTTCCACTGGAGAAGATGACTTTGTTTCCATCTGGCGGGAGTGCAGTGATGATCAAAAGGATTGTTTAGGATCTATTGTGGTTCCGATTGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaactttttgtctggtcatatcagtcttaactgtgttttattgctatacacaagGGGTTCAGCTTCTGTTGGGGAAGATCACTTTTTTTCCATCTGGAGGAATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCCATAGGT
                         tcttaac  putative branch site (score: 2)
                                  tgttttatt  TA-rich tract