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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatgttattggaatttgggttaaactccacaaaatggactttatatataaactatgtacattagtcatatttagtgagtgagtggattgattgtgggaattgtgaatcagGAGCTGGTGCAAATGGAATGTAGTAGATGGGCGAGCAAAGGGGTGAACATAAAGTACGAGGTGAGGGACAACAGAGACGGGTACAAAGCAGGGGCTCTGA

Basic information

species Glycine max
transcript GLYMA10G07560.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07560.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 2
gtatgcatgttattggaatttgggttaaactccacaaaatggactttatatataaactatgtacattagtcatatttagtgagtgagtggattgattgtgggaattgtgaatcagGAGCTGGTGCAAATGGAATGTAGTAGATGGGCGAGCAAAGGGGTGAACATAAAGTACGAGGTGAGGGACAACAGAGACGGGTACAAAGCAGGGGCTCTGA
                                            | |  | || || |    | |  | ||  || | | | |||     |    |||   |||     |  |||||  ||||| |  | ||||||   |||||||| ||||||||  | ||||| ||||||||| | ||  |||||||| | |||||||||||||| ||||| |
-------------------------------------------gtatccacatcaaattctcaaaacattccgatctgg-gggtgtcctaacaatttggatgaaaaa-aatgcagGACTTGGTGGAGCTAGAATGTCAGAGATGGGCAAGCAAAGGCATAAACATCAAGTACGAGATAAGAAACAACAGAAATGGGTACAAAGCAGGAGCTCTCA

upper sequence: GLYMA10G07560.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ35401 (Selaginella moellendorffii), 3'ss of exon 2
gtatgcatgttattggaatttgggttaaactccacaaaatggactttatatataaactatgtacattagtcatatttagtgagtgagtggattgattgtgggaattgtgaatcagGAGCTGGTGCAAATGGAATGTAGTAGATGGGCGAGCAAAGGGGTGAACATAAAGTACGAGGTGAGGGACAACAGAGACGGGTACAAAGCAGGGGCTCTGA
                                            |||   || |   |       || |   |||   |||  ||  ||   ||||||   |  ||   |  ||| | |||||| |  | || ||    |||||||||||||||||||||||||| ||||| ||| |  ||||||||||  | || ||||| || ||||| || |
-------------------------------------------gtttgcctagagcttccacctcttggaactat---gtggatggatg---tgattggatgttttac-acgcagAATCTGGTGGAGCTCGAGTGCCAGAGATGGGCGAGCAAAGGGGTGAACATCAAGTATGAGATCCGGGACAACAGGAATGGCTACAAGGCGGGGGCGCTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacattagtcatatttagtgagtgagtggattgattgtgggaattgtgaatcagGAGCTGGTGCAAATGGAATGTAGTAGATGGGCGAGCAAAGGGGTGAACATAAAGTACGAGGTGAGGGACAACAGAGACGGGTACAAAGCAGGGGCTCTGA
                             gattgat  putative branch site (score: 4)
         tcatattta  TA-rich tract