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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacagtactgttctttccatttcttgggtctttatggttcatttgttcatgattaacttgaggctgcggattataattctcagATAGCACTAGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGACTTAAGGCACATTCGACGGTTGCGATTCTGGCCCTTGAATAAAGTCCTCT

Basic information

species Glycine max
transcript GLYMA10G07430.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07430.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g04220.t01 (Vitis vinifera), 3'ss of exon 3
gtaacagtactgttctttccatttcttggg------tctttatggttcatt--tgttcatgattaa--cttgaggctgcggattataattctcagATAGCACTAGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGACTTAAGGCACATTCGACGGTTGCGATTCTGGCCCTTGAATAAAGTCCTCT
||||    |   | ||| | | | ||   |      |||| ||  | |||   || | |||  |||   || |   ||| ||||   || ||||||| ||  ||||||| |  |||||||| || ||||| || ||||||||||| || |||||||| || |||||||| ||||||||| ||||||| || ||  
gtaagctgatcatccttgctactactaaagaaattctcttaattatgcatgggtgctaatgtctaaacttttaatatgctgatt---atcctcagATTGCCTTAGGTGGTCAATATTCCCGGGAGTTCTTCAACAGATATGGTGATTTGAGGCACATCCGCCGGTTGCGTTTCTGGCCCATGAATAAGGTTCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13790076|gb|BG652667.1|BG652667
EST:     GACCACTTAGCATTAATGATGGAACTTCTTGGAATGATGCCACGTAAG                         ATAGCACTAGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGAC
genomic: GACCACTTAGCATTAATGATGGAACTTCTTGGAATGATGCCACGTAAGgtaacagtac ... taattctcagATAGCACTAGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGAC
EST: gi|208255677|gb|GE056100.1|GE056100
EST:     ATTAATGATGGAACTTCTTGGAATGATGCCACGTAAG                         ATAGCACTAGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGAC
genomic: ATTAATGATGGAACTTCTTGGAATGATGCCACGTAAGgtaacagtac ... taattctcagATAGCACTAGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttatggttcatttgttcatgattaacttgaggctgcggattataattctcagATAGCACTAGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGACTTAAGGCACATTCGACGGTTGCGATTCTGGCCCTTGAATAAAGTCCTCT
                      gattaac  putative branch site (score: 2)
                                                ttctc  putative PPT
                                         attataattct  TA-rich tract