Sequence
atgc intronic sequence ATGC exonic sequencegtccaccaatacatataaatgcctataaatttttggtctcaaattttattcatgaattttattaacacttttttttttaaaaaaaaattatttatagTGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG
Basic information
species | Glycine max |
transcript | GLYMA10G06590.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G06590.2 (Glycine max), 3'ss of exon 3
lower sequence: AT5G03290.1 (Arabidopsis thaliana), 3'ss of exon 3
------------------------------gtccaccaatacatataaatgcctataaatttttggtctcaaattttattcatga-attttatt--aacacttttttttttaaaaaaaaattatttatagTGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG
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gtctgcccgttttataactccaagcatttcttatacggagggatcaaagcaatgattgttatttctgctagtttttttttttttacattttgttctgagaccatttttattttgcttccgtt--tttcagTGTTGTCGTGAGGTTGCTGAGAAGTATCCTGAGATCACTTACGAGGAGGTCGTTATTGACAACTGCTGTATGATG
upper sequence: GLYMA10G06590.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0040g01700.t01 (Vitis vinifera), 3'ss of exon 3
gtccaccaatacatataaatgcctataaatttttggtctcaaattttattcatgaattttattaacacttttttttttaaaaaaaaattat-ttatagTGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG
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----gttgtctgttacaaatgcttaactttatgttgcataatcatttacctatgcatcctactaaggtgagttttctc--------tttgtgttgcagTGTTGTCGGGAAGTTGCAGAGAAGTACCCAGAGATAAAATATGAGGAAGTTGTCATTGACAATTGCTGTATGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192328451|gb|FK020725.1|FK020725EST: CCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAG TGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAG-AAGTT
genomic: CCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAGgtccaccaat ... ttatttatagTGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttattcatgaattttattaacacttttttttttaaaaaaaaattatttatagTGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG
tattaac putative branch site (score: 1)
aattttattaacactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtccaccaatacatataaatgcctataaatttttggtctcaaattttattcatgaattttattaacacttttttttttaaaaaaaaattatttatagTGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC