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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacacttgatctgaattattgaatttcacgtcacagattcttgctttactaattaatatcatgaaaatgctgacaaagagagggggaaaaaagaaagggatggaaatgcacatttcataatgatgattcctataatttcctttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG

Basic information

species Glycine max
transcript GLYMA10G06580.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8284137|gb|BE021696.1|BE021696
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|6454402|gb|AW185085.1|AW185085
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|213618065|gb|DB963698.1|DB963698
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|17022031|gb|BM093065.1|BM093065
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|209709321|gb|BW680986.1|BW680986
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|12690012|gb|BG156348.1|BG156348
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|151394548|gb|EV264419.1|EV264419
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|5606299|gb|AI900405.1|AI900405
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|120531830|gb|EH259963.1|EH259963
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|19936079|gb|BQ080713.1|BQ080713
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|13125032|gb|BG315575.1|BG315575
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAA                         GTGCTACTCACAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|16105072|gb|BI892812.1|BI892812
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agggatggaaatgcacatttcataatgatgattcctataatttcctttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
                                        tttccttttt  CT-rich tract
                                   tataatttccttttt  TA-rich tract