1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgaagcttgattttttattttttttaagtttattttgcactttgtaacttattagaatgtgaagtttcaaagttaatgaatgattcagtttatccacagGTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCGGATAGAATCCAAGCAATACCAGATGGGGCTCCTCCTGTGC
species | Glycine max |
transcript | GLYMA10G05870.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTAGCTGTGAAAAAG GTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTTEST: gi|26048180|gb|CA784745.1|CA784745
genomic: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTAGCTGTGAAAAAGgttttatttt ... ttatccacagGTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTT
EST: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTAGCTGTGAAAAAG GTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTTEST: gi|298198162|gb|HO039701.1|HO039701
genomic: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTAGCTGTGAAAAAGgttttatttt ... ttatccacagGTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTT
EST: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTAGCTGTGAAAAAG GTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTTEST: gi|26048411|gb|CA784901.1|CA784901
genomic: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTAGCTGTGAAAAAGgttttatttt ... ttatccacagGTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTT
EST: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTAGCTGTGAAAAAG GTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTTEST: gi|21888729|gb|BQ741942.1|BQ741942
genomic: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTAGCTGTGAAAAAGgttttatttt ... ttatccacagGTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTT
EST: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTAGCTGTGAAAAAG GTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGCTCTTEST: gi|9565687|gb|BE475196.1|BE475196
genomic: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTAGCTGTGAAAAAGgttttatttt ... ttatccacagGTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTT
EST: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTAGCTGTGAAAAAG GTAAAGGGGCTTTCATCACAAGA
genomic: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTAGCTGTGAAAAAGgttttatttt ... ttatccacagGTAAAGGGGCTTTCATCACAAGA
taacttattagaatgtgaagtttcaaagttaatgaatgattcagtttatccacagGTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCGGATAGAATCCAAGCAATACCAGATGGGGCTCCTCCTGTGC
tttatcc CT-rich tract
tattagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaagcttgattttttattttttttaagtttattttgcactttgtaacttattagaatgtgaagtttcaaagttaatgaatgattcagtttatccacagGTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCGGATAGAATCCAAGCAATACCAGATGGGGCTCCTCCTGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC