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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgttgcttgaaatgccttatttttggtttgtattttggtatgtttgctagcgtcaaacattgtatcaattatattggatctctattgcagGTAGGAGTACCACTTCAGACAATGGTTCTTTTATTTATCCTTTGGAAAATATGTCCATAGATAGCATTTCTTTTCCATCTCATTGGAACACTGCCCCAAG

Basic information

species Glycine max
transcript GLYMA10G05850.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343723|gb|GR857479.1|GR857479
EST:     TGACCAGAACTGGAATCATATGCATATGGATCAACAATATGTGAACCATG                         GTAGGAGTACCACTTCAGACAATGGTTCTTTTATTTATCCTTTGGAAAATA
genomic: TGACCAGAACTGGAATCATATGCATATGGATCAACAATATGTGAACCATGgtagtgttgc ... tctattgcagGTAGGAGTACCACTTCAGACAATGGTTCTTTTATTTATCCTTTGGAAAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtatgtttgctagcgtcaaacattgtatcaattatattggatctctattgcagGTAGGAGTACCACTTCAGACAATGGTTCTTTTATTTATCCTTTGGAAAATATGTCCATAGATAGCATTTCTTTTCCATCTCATTGGAACACTGCCCCAAG
                                           tctctatt  CT-rich tract
                   aaacattgtatcaatt  TA-rich tract