1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cagcatgctggtctagtttcctgcaattgaactctgcttttcactaatgattttttttttattattatggtttatcgtgggccaattgtgaatgttgcagATTGAG
species | Glycine max |
transcript | GLYMA10G05610.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGAGGAGTATATTGATCCGCTCAAGGTTTACCTCGCCGCTTACAGAGAG ATTGAGEST: gi|298196414|gb|HO041157.1|HO041157
genomic: TCGAGGAGTATATTGATCCGCTCAAGGTTTACCTCGCCGCTTACAGAGAGgtaattttta ... aatgttgcagATTGAG
EST: TCGAGGAGTATATTGATCCGCTCAAGGTTTACCTCGCCGCTTACAGAGAG ATTGAGEST: gi|16341802|gb|BI967397.1|BI967397
genomic: TCGAGGAGTATATTGATCCGCTCAAGGTTTACCTCGCCGCTTACAGAGAGgtaattttta ... aatgttgcagATTGAG
EST: TCGAGGAGTATATTGATCCGCTCAAGGTTTACCTCGCCGCTTACAGAGAG ATTGAGEST: gi|193560548|gb|FK521549.1|FK521549
genomic: TCGAGGAGTATATTGATCCGCTCAAGGTTTACCTCGCCGCTTACAGAGAGgtaattttta ... aatgttgcagATTGAG
EST: GCTTACAGAGAG ATTGAGEST: gi|298197939|gb|HO039478.1|HO039478
genomic: GCTTACAGAGAGgtaattttta ... aatgttgcagATTGAG
EST: TCGAGGAGTATATTGATCCGCTCAAGGTTTACCTCGCCGCTTACAGAGAG ATTGAGGGTGAT
genomic: TCGAGGAGTATATTGATCCGCTCAAGGTTTACCTCGCCGCTTACAGAGAGgtaattttta ... aatgttgcagATTGAGGGTGAT
aatgattttttttttattattatggtttatcgtgggccaattgtgaatgttgcagATTGAG
cactaat putative branch site (score: 2)
ttttttttttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcatgctggtctagtttcctgcaattgaactctgcttttcactaatgattttttttttattattatggtttatcgtgggccaattgtgaatgttgcagATTGAG
- gcatgct
- - - - - - - - - tcctgca
- - - - - - - - - - - - - - - -ctctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgggc