1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgtttctatttgagatggcgatattctctgtccctaaaggtgcaacatttcatgcatccctgacatgctgctttctggttttccagTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGCTTGCACCTGGGTTTGCCTCATGGGATGAAACTTCCCTGCTGATGAATGC
species | Glycine max |
transcript | GLYMA10G05560.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCAAAGCGCAAAGCTGCTCATCCTTACCCGCAAAAGGCATCAAAAAATG TTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGCEST: gi|7589789|gb|AW705556.1|AW705556
genomic: TCCAAAGCGCAAAGCTGCTCATCCTTACCCGCAAAAGGCATCAAAAAATGgtttgtttct ... ggttttccagTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGC
EST: TCCAAAGCGCAAAGCTGCTCATCCTTACCCGCAAAAGGCATCAAAAAATG TTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGCEST: gi|11688757|gb|BF596433.1|BF596433
genomic: TCCAAAGCGCAAAGCTGCTCATCCTTACCCGCAAAAGGCATCAAAAAATGgtttgtttct ... ggttttccagTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGC
EST: TCCAAAGCGCAAAGCTGCTCATCCTTACCCGCAAAAGGCATCAAAAAATG TTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGCEST: gi|9205170|gb|BE331394.1|BE331394
genomic: TCCAAAGCGCAAAGCTGCTCATCCTTACCCGCAAAAGGCATCAAAAAATGgtttgtttct ... ggttttccagTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGC
EST: TCCAAAGCGCAAAGCTGCTCATCCTTACCCGCAAAAGGCATCAAAAAATG TTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGC
genomic: TCCAAAGCGCAAAGCTGCTCATCCTTACCCGCAAAAGGCATCAAAAAATGgtttgtttct ... ggttttccagTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGC
ccctaaaggtgcaacatttcatgcatccctgacatgctgctttctggttttccagTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGCTTGCACCTGGGTTTGCCTCATGGGATGAAACTTCCCTGCTGATGAATGC
ccctgac putative branch site (score: 3)
ctttctggttttcc putative PPT
aacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttctatttgagatggcgatattctctgtccctaaaggtgcaacatttcatgcatccctgacatgctgctttctggttttccagTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGCTTGCACCTGGGTTTGCCTCATGGGATGAAACTTCCCTGCTGATGAATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT