1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtgatatcttccttcatgcttaaaattatttgtttgatatgatgtgagccttcagttactttgccaattatgactattatttttttttctttccctacagTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAGTCTATAAAATCAAAGAGTCTTGAGAAGTCTGATAATAATTCTGGAAGCAATGACGAAG
species | Glycine max |
transcript | GLYMA10G05520.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGT TCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAGTCTGTAAAA
genomic: AGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTgtaagctgac ... ttccctacagTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAGTCTATAAAA
gagccttcagttactttgccaattatgactattatttttttttctttccctacagTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAGTCTATAAAATCAAAGAGTCTTGAGAAGTCTGATAATAATTCTGGAAGCAATGACGAAG
ctattatttttttttc CT-rich tract
aattatgactattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatatcttccttcatgcttaaaattatttgtttgatatgatgtgagccttcagttactttgccaattatgactattatttttttttctttccctacagTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAGTCTATAAAATCAAAGAGTCTTGAGAAGTCTGATAATAATTCTGGAAGCAATGACGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - -tcatgct
- - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - -tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - agccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttgcc