1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catatcatgttgttcttgtgaccttaaattgttatgaattttattgtctctattgagaaattggatttgaatacttatgaaatattgatgaatcttgcagGTGGTTGAAATTGGGAAAGGAAGTAAGGTGAAATATGAACTTGACAAAAGAACTGGTCTTATTATG
species | Glycine max |
transcript | GLYMA10G05130.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACCTGAAGCTCCAAAGATCTTCAACTGT GTGGTTGAAATTGGGAAAGGAAGTAAGGTGAAATATGAACTTGACAAAAGAEST: gi|192331411|gb|FK022716.1|FK022716
genomic: GACCTGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTTGAAATTGGGAAAGGAAGTAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCTGAAGCTCCAAAGATCTTCAACTGT GTGGTTGAAATTGGGAAAGGAAGTAAGGTGAAATATGAACTTGACAAAAGA
genomic: GACCTGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTTGAAATTGGGAAAGGAAGTAAGGTGAAATATGAACTTGACAAAAGA
gtctctattgagaaattggatttgaatacttatgaaatattgatgaatcttgcagGTGGTTGAAATTGGGAAAGGAAGTAAGGTGAAATATGAACTTGACAAAAGAACTGGTCTTATTATG
tattgat putative branch site (score: 3)
atttgaatacttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatcatgttgttcttgtgaccttaaattgttatgaattttattgtctctattgagaaattggatttgaatacttatgaaatattgatgaatcttgcagGTGGTTGAAATTGGGAAAGGAAGTAAGGTGAAATATGAACTTGACAAAAGAACTGGTCTTATTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - tcatgtt
- - - - - - -tcttgtg
- - - - - - - - - - - - - - -tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatttg