1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaattttaacccccaactttagctgtcatgaaggtaccggggatggaagagtgatgccttgtatcactctatgagctcttgggattcttttcctacattcatgagcttaccagtaaatatgtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCTAGAGGAGATGTAAAAGTG
species | Glycine max |
transcript | GLYMA10G04920.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAEST: gi|208266243|gb|GE065446.1|GE065446
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAEST: gi|192324369|gb|FK015720.1|FK015720
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAATG -TATGATGCTCACTCAG-TGGAGAACGTGAGATTCAAAG-ACCATGTTAGAEST: gi|207767339|gb|GD740647.1|GD740647
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACNCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAEST: gi|208176170|gb|GD974779.1|GD974779
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: TTCCTTCTTATTGTATTCATTGATGAAATCGATGCAGTCGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAEST: gi|14991505|gb|BI317178.1|BI317178
genomic: -TCCTTC-TATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTCCAAAAAG GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAEST: gi|23057351|gb|BU578025.1|BU578025
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAEST: gi|13480000|gb|BG509343.1|BG509343
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAEST: gi|193356897|gb|FK319589.1|FK319589
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAAEST: gi|254313974|gb|GR831603.1|GR831603
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAA
EST: TCT-CTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAEST: gi|17400370|gb|BM177152.1|BM177152
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGGTGGTACAAAAAG GTATGATGCTCACEST: gi|207825707|gb|GD797334.1|GD797334
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCAC
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAAEST: gi|207821859|gb|GD794298.1|GD794298
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTNTGATGCTCACTCAGGTGGAGAAEST: gi|6454899|gb|AW185509.1|AW185509
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAEST: gi|254316119|gb|GR825928.1|GR825928
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: TGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAAG GTATGATGCTCACTCAGGTGGAGAACGGGAGATTCAAAGGACCATGTTAGEST: gi|24205871|gb|BU965124.1|BU965124
genomic: TGTATTCATTGATGAAATCGATGCAGTTGGTAC-AAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAG
EST: ATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAEST: gi|22927270|gb|BU544409.1|BU544409
genomic: ATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: ATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAEST: gi|254316118|gb|GR825927.1|GR825927
genomic: ATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAACGGGAGATTCAAAGGACCATGTTAGAEST: gi|208165264|gb|GD964428.1|GD964428
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAAEST: gi|298164759|gb|HO014404.1|HO014404
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAEST: gi|14011173|gb|BG726104.1|BG726104
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
ctcttgggattcttttcctacattcatgagcttaccagtaaatatgtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCTAGAGGAGATGTAAAAGTG
agcttac putative branch site (score: 3)
agtaaatatgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttaacccccaactttagctgtcatgaaggtaccggggatggaagagtgatgccttgtatcactctatgagctcttgggattcttttcctacattcatgagcttaccagtaaatatgtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCTAGAGGAGATGTAAAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG