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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtaatgcactaatatttagtaaacatatatttgagaaacatgatttatgatatccaagtttgtgattatggcacctgaatgatttattttatacaacagAACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAGGGGAATCTTCTGGGGTTCACAAGGCGGTTGAACTTGTTGCAATTCATCT

Basic information

species Glycine max
transcript GLYMA10G03910.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G03910.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 3
--------agtaatgcactaatatttagtaaacatatatttgagaaacatgattta--tgatatccaagtttgtgattatggcacctgaatgatttattttatacaacagAACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAGGGGAATCTTCTGGGGTTCACAAGGCGGTTGAACTTGTTGCAATTCATCT
        ||   |   ||| | ||   || |  | | | ||   | |||   | |  |||| |   |  | |  ||| |  || || | | |   ||||    |  ||||| |||||||  |||||||||||| | |||||| | ||||||| |||||||||||  || |  | || ||||| || ||||||||  |||||  | ||||
atggcacaagctctattctacttttc--tagatctct-tctggctatcatatctgaaatgatgtatgaact-gctattct--catcttattaaaaaattt----ctgcagAAAACCTGCCTCTTTTTGCTCTGCAAAATGATACTGTTGTTGAGATACAAGGGGAGCCTGCAAGTGTGCACAAAGCTGTTGAACTAATTGCATCTAATCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287566|gb|BI471457.1|BI471457
EST:     AAAATCCTTTCAAGATGCCACAGGTTGCAATATACGCATTCTTGGTTCAG                         AACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAG
genomic: AAAATCCTTTCAAGATGCCACAGGTTGCAATATACGCATTCTTGGTTCAGgtgcgatcac ... tatacaacagAACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAG
EST: gi|18734549|gb|BM528247.1|BM528247
EST:     ATCCTTTCAAGATGCCACAGGTTGCAATATACGCATTCTTGGTTCAG                         AACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAG
genomic: ATCCTTTCAAGATGCCACAGGTTGCAATATACGCATTCTTGGTTCAGgtgcgatcac ... tatacaacagAACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAG
EST: gi|254323298|gb|GR840103.1|GR840103
EST:     AAAATCCTTTCAAGATGCCACAGGTTGCAATATACGCATTCTTGGTTCAG                         AACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAG
genomic: AAAATCCTTTCAAGATGCCACAGGTTGCAATATACGCATTCTTGGTTCAGgtgcgatcac ... tatacaacagAACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgatatccaagtttgtgattatggcacctgaatgatttattttatacaacagAACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAGGGGAATCTTCTGGGGTTCACAAGGCGGTTGAACTTGTTGCAATTCATCT
                                      tttatttt  CT-rich tract
                               tgaatgatttatttta  TA-rich tract