1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtataaagttttattactgacttttgtggtctgctgcatttctcttgaccctctgcagcatcattttttcctgttgtctctgatattattatttgttcagACAGATAGAGCTGCCATGCTGGACGAAATTGTGGATTATGTCAAGTTCTTGAGGCTTCAAGTGAAG
species | Glycine max |
transcript | GLYMA10G03690.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGGGCTTTGCAAGAACTGGTCCCCAGTGTCAACAAG ACAGATAGAGCTGCCATGCTGGACGAAATTGTGGATTATGTCAAGTTCTTG
genomic: CAGGGCTTTGCAAGAACTGGTCCCTAGTGTCAACAAGgtatttgaat ... atttgttcagACAGATAGAGCTGCCATGCTGGACGAAATTGTGGATTATGTCAAGTTCTTG
tgaccctctgcagcatcattttttcctgttgtctctgatattattatttgttcagACAGATAGAGCTGCCATGCTGGACGAAATTGTGGATTATGTCAAGTTCTTGAGGCTTCAAGTGAAG
tttgttc CT-rich tract
tgatattattatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaagttttattactgacttttgtggtctgctgcatttctcttgaccctctgcagcatcattttttcctgttgtctctgatattattatttgttcagACAGATAGAGCTGCCATGCTGGACGAAATTGTGGATTATGTCAAGTTCTTGAGGCTTCAAGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - tactgac
- - - - - - - - - - - - - -ggtctgc
- - - - - - - - - - - - - - - - - -gcatttc
- - - - - - - - - - - - - - - - - - - - - -cttgacc
- - - - - - - - - - - - - - - - - - - - - - - - - ctctgca