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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtattcattttgaacttaattagattggtgggccaaaaaggaaattgatcatagttgaaaaaatatcttttttttttggtgatgttagGACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAGGGACTAGCCAGGAGGCACAAGAATTTGCATGTACAAGATATAAGGCTGA

Basic information

species Glycine max
transcript GLYMA10G03000.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G03000.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0104g00320.t01 (Vitis vinifera), 3'ss of exon 3
gtatggtattcattttgaacttaattagattggtgggccaaaaag-gaaattgatcatagttgaaaaaat---atctt----ttttttttggtgatgttagGACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAGGGACTAGCCAGGAGGCACAAGAATTTGCATGTACAAGATATAAGGCTGA
 |     ||| | || ||  | | | | |    | |   | |    |  |||  || |   ||||         ||||    || | |  |||| |   |||  ||||||| || |||||||||||||| |||||| ||||| ||||||| ||| | ||  || |||||||||||||||||||||||||||| ||||||||
atcatcaatttaatt-gacataagtcatagatttagattagattttgggatttttcttccctgaatttgctgagtcttgagattatatcgggtgtttccagGTTTTGAGATCTTAGCATTTCCATGCAATCAATTTCTGAAGCAAGAGCCTGGGTCGAGTGAGCAGGCACAAGAATTTGCATGTACAAGATACAAGGCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|41145522|gb|CK605733.1|CK605733
EST:     TGCCAATTACAGCCAGTTAACTCAGATTTACTCCACATACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACAGCCAGTTAACTCAGATTTACTCCACATACAAGAGCAGGGgtatggtatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|38193590|gb|CF922796.1|CF922796
EST:     TGCCAATTACAGCCAGTTAACTCAGATTTACTCCACATACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACAGCCAGTTAACTCAGATTTACTCCACATACAAGAGCAGGGgtatggtatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|41145751|gb|CK605962.1|CK605962
EST:     TGCCAATTACAGCCAGTTAACTCAGATTTACTCCACATACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACAGCCAGTTAACTCAGATTTACTCCACATACAAGAGCAGGGgtatggtatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|38193139|gb|CF922345.1|CF922345
EST:     TGCCAATTACAGCCAGTTAACTCAGATTTACTCCACATACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACAGCCAGTTAACTCAGATTTACTCCACATACAAGAGCAGGGgtatggtatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|57574087|gb|CX547062.1|CX547062
EST:     CTCAGATTTACTCCACATACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAG
genomic: CTCAGATTTACTCCACATACAAGAGCAGGGgtatggtatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|38192007|gb|CF921213.1|CF921213
EST:     TGCCAATTACAGCCAGTTAACTCAGATTTACTCCACATACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACAGCCAGTTAACTCAGATTTACTCCACATACAAGAGCAGGGgtatggtatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaaaggaaattgatcatagttgaaaaaatatcttttttttttggtgatgttagGACTTGAGATATTGGCATTTCCATGCAACCAATTTTTGAAGAAAGAGCCAGGGACTAGCCAGGAGGCACAAGAATTTGCATGTACAAGATATAAGGCTGA
         aattgat  putative branch site (score: 4)
                                tcttttttttttggt  putative PPT
        aaattgatcatagttg  TA-rich tract