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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgatcttttttcactgttctccctgcattcactctcagatattgtcttctcatatgtgaatgtctgttacaacttaacttacaatttgaaattggcaattcagGATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAG

Basic information

species Glycine max
transcript GLYMA10G02380.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02380.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 3'ss of exon 3
gtaacgatcttttttcactgttctccctgcattcactctcagatattgtcttctcatatgtgaatgtctgttacaacttaacttacaatttgaaattggcaattcagGATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAG
    |||  | | |   || || |   | ||||   |  ||  |  | |  ||   || ||   ||     | |   ||  || |   |||    ||| || | |||||||| ||||  |||||| | ||||| || || ||||| || || || ||||| ||||| ||||||||||||||||||
----cgaattgtgtgttctcttttgggt-catttggttccaattggtttgatcgttta-gtttgtgatgaatgctgtttc-ctcattgtttatggttgtcattgcagGATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG

upper sequence: GLYMA10G02380.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 3
gtaacgatcttttttcactgttctccctgcattcactctcagatattgtcttctcata-tgtgaatgtctgttacaact-taacttacaatttgaaattggcaattcagGATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAG
     | |     ||||   |  |  |    |    |||||| |||  |  |||  ||   ||   || |  |  |  | |   |||  ||       | | | | ||||| || || |  |||||| | ||||| ||||| ||||||||||| || ||||| ||||| ||||| ||||||||||||
----tggttgaaattcaa-atagtaacaatgtggggtctcagttatcctgctctattagcttgtgagtttcctgtagttatggtttatgat----ggctcgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG

upper sequence: GLYMA10G02380.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G095114_T01 (Zea mays), 3'ss of exon 3
---------------------------------------------------gtaacgatcttttttcactgttct-ccctgcattcactctcaga-tattgtcttctcatatgtga-atgtctgttacaacttaacttacaatttgaaat---tggcaattcagGATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAG
                                                      |  |  |   | || ||||      ||   | | ||| | | ||   |  |    ||   |  || |||||     ||  | | |   |||  |||   ||| | | |||||||| || |  |||||| | ||||| ||||| |||||||| || || ||||| ||||| ||||| ||||||||||||
gtgaaaaatctggtgcccttgattcccattgtgataggttcttgttagcaaaagattagttaagtgcattgtttgattttgaggtgaatctgatagtaacattatggggtaccagttatttctgtctttcctgtagtaaaggtttataatggctggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG

upper sequence: GLYMA10G02380.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0005g00230.t01 (Vitis vinifera), 3'ss of exon 5
gtaacgatcttttt---tcactgttctc-cctgcattcactctcagatattgtcttctcatatgtgaatgtctgttacaacttaacttacaatttgaaattggcaattcagGATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAG
||||  | || |||   | ||||||||    ||   |     ||  || ||  |||  ||  | |   |  || ||  || | |  || ||   |   |||   |||  ||||||||||||| |||||| | ||||| ||||||||||| || || ||||| || || || ||||| ||||||||||||
gtaatcaactctttaattgactgttcttgtttgttgtttacttcttat-ttaccttgacagttcttgtttgctcttcaaattcatgtttca---tccgatt--taatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG

upper sequence: GLYMA10G02380.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0060g02240.t01 (Vitis vinifera), 3'ss of exon 3
gtaacgatcttttttcact--gttctccctgcattcactctcagatattgtctt-----ctcatatgtgaatgtctgttacaactta-acttacaatttgaaattggcaattcagGATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAG
|||  |   || ||||| |   || |  ||   ||  || | |  |||| |  |     || | |  |||   |||  |   | | |   | |||||  | ||||   |||  ||||||||||||| |||||| | ||||| || ||||||||||| || ||||| || ||||| ||  | || ||||| |||
gtatggtatttctttcaatcaattatgtcttatttttctttaatttatttttataatgactta-aaatgatcatcttctgtgattcatggtcacaatg-ggaattaa-aatgtagGATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAG

upper sequence: GLYMA10G02380.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ10085 (Selaginella moellendorffii), 3'ss of exon 2
gtaacgatcttttttcactgttctccctgcattcactctcagatattgtcttctcatatgtgaatgtctgttacaacttaacttacaatttgaaattggcaattcagGATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAG
                                                                | |||  | |   |    |  ||   |    |   |  | |||||||||||  | |||||| | |||||||||||||||||  | ||||| ||||| ||||| ||||| ||||| || |||
--------------------------------------------------------------gttttctccttcctttcttttctcatcct----tcttctctccagGATGGAGACCGGTTTTGGAGAATGCCCGAGTGCTACATCAGGGGCAACACCATCAAGTATCTTCGTGTTCCAGACGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcatatgtgaatgtctgttacaacttaacttacaatttgaaattggcaattcagGATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAG
                           aacttac  putative branch site (score: 2)
                              ttacaatttgaaatt  TA-rich tract