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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaacctttggttcaatttttgctaattattatttttaatagaccaaactgctcccaactaaatcttaaaagagtattttgtttctgagtgtagGTCTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAG

Basic information

species Glycine max
transcript GLYMA10G02130.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02130.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G02290.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaagtaaacctttggttcaatttttgctaattattatttttaatagaccaaactgctcccaactaaatcttaaaagagtattttgtttctgagtgtagGTCTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAG
    ||| | | ||  ||     |    |||| |||  || | | | |  ||| | || | |||| | | ||       | || ||||| | ||     || ||    ||||| || || ||||| ||| | || ||    |  || |||||| |||| || || || ||||||||||||||||||||||||
----gtataacatttttttgtcatactttaataatt--ttgtgacataaaaaatttcttc-aactgatttttt------ttttgtgtttttaag-

upper sequence: GLYMA10G02130.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0005g00740.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------gtaagtaaacctttggttcaatttttgctaatt--------attatttttaatagaccaaactgctcccaactaaatcttaaaagagtattttgtttctgagtgtagGTCTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAG
                                |  |||  ||| ||  ||    || ||  |        |||  |||| |    ||||  | ||    |||  || ||       | |  | |||||| ||  |||| || ||||||||||| | |||||| ||| | ||||||||||  ||||||   |||||||||||||||||||||||||| ||||||||||||
gtaagatttattccttatacttttaaatacagaaaaaatgttttgtaaaaacaatggtatctcaacacagatttattttcagcccccaatatccttgagacttgatttttttttt-tttaatctttctgggtacagGTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaccaaactgctcccaactaaatcttaaaagagtattttgtttctgagtgtagGTCTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAG
                 aactaaa  putative branch site (score: 2)
                                     ttttgtttct  putative PPT
                    taaatcttaaaagagt  TA-rich tract