1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttttaggtgcagaaaagttgtttcttgattatttgtggaaaaattgagaaatagtctaaaggctcatttttaattcgttggtggtgtattacattacagGGATAGCATGCAAATTTCAAGGACTGAACAAGAACCGTTAAATACAAGAATAGTGGGTATAGTTGAAGGAAACAATTACTCTGAATGCACGTATGCTTCG
species | Glycine max |
transcript | GLYMA10G01680.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAATCGCAAGTAGCTGATGCAGCCATGACCATTAG GGATAGCATGCGAATTTCAAGGACTGAACAAGAACCGTTAAATACAAGAATEST: gi|57575478|gb|CX548453.1|CX548453
genomic: AAATCGCAAGTAGCTGATGCAGCAATGACCATTAGgtattcccgc ... tacattacagGGATAGCATGCAAATTTCAAGGACTGAACAAGAACCGTTAAATACAAGAAT
EST: ACAGCAGCCCCAAAGAAATCGCAAGTAGCTGATGCAGCAATGACCATTAG GGATAGCATGCAAATTTCAAGGACTGAACAAGAACCGTTAAATACAAGAATEST: gi|15814766|gb|BI787041.1|BI787041
genomic: ACAGCAGCCCCAAAGAAATCGCAAGTAGCTGATGCAGCAATGACCATTAGgtattcccgc ... tacattacagGGATAGCATGCAAATTTCAAGGACTGAACAAGAACCGTTAAATACAAGAAT
EST: ACAGCAGCCCCAAAGAAATCGCAAGTAGCTGATGCAGCAATGACCATTAG GGATAGCATGCAAATTTCAAGGACTGAACAAGAACCGTTAAATACAAGAAT
genomic: ACAGCAGCCCCAAAGAAATCGCAAGTAGCTGATGCAGCAATGACCATTAGgtattcccgc ... tacattacagGGATAGCATGCAAATTTCAAGGACTGAACAAGAACCGTTAAATACAAGAAT
tgagaaatagtctaaaggctcatttttaattcgttggtggtgtattacattacagGGATAGCATGCAAATTTCAAGGACTGAACAAGAACCGTTAAATACAAGAATAGTGGGTATAGTTGAAGGAAACAATTACTCTGAATGCACGTATGCTTCG
ttttaat putative branch site (score: 3)
atttttaattcgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttaggtgcagaaaagttgtttcttgattatttgtggaaaaattgagaaatagtctaaaggctcatttttaattcgttggtggtgtattacattacagGGATAGCATGCAAATTTCAAGGACTGAACAAGAACCGTTAAATACAAGAATAGTGGGTATAGTTGAAGGAAACAATTACTCTGAATGCACGTATGCTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - ggtgcag
- - - - - - - - - - - - - - - - - - - gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtggt