Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtacacgttttcatgaagaaattgttattttattggaagcatttctttttgttcatcagtttgttttcttgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTCAATGACTTTGATAGGTTCAAGATAATGTT

Basic information

species Glycine max
transcript GLYMA10G00680.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00680.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os04g43540.1 (Oryza sativa), 3'ss of exon 3
--gttggtacacgttttcatgaagaaattgttattt--tattggaagcatttctttttgttcatcagtttgttttcttgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTCAATGACTTTGATAGGTTCAAGATAATGTT
  | ||   ||   ||     | ||| || || |    | ||    ||| || |  |||     ||   || ||         |||||||| |||||||  |||||||| || || ||||| |  ||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||| | |||||
gtgatgaaccattcttcggctatgaactttttttccactgttaagtgcagttttaattgaatgccatcctgatt---------acagATGTGAAGAACAAGTGGGAGAACAGCTCATGGGGTAAGAAACTGATTGTCCAGAAGAGGAGAGCATCCCTCAACGACTTTGACAGGTTCAAGGTTATGTT

upper sequence: GLYMA10G00680.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os02g40880.1 (Oryza sativa), 3'ss of exon 3
gttggtacacgttttcatgaagaaattgttattttattggaagc-atttctttttgttcat---cagtttgttttcttgttgaac------agATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTCAATGACTTTGATAGGTTCAAGATAATGTT
||| |||    | ||      |   |    ||  |||  | ||  |||| ||| ||| |||    | | ||  |  | |||   |      ||||||||||||||  |||||||| || || |||||||  || || ||||| ||||||||||| || || |||||||||||||| ||||||||| | |||||
gttagtatgaatgtt------gtgctaccaatcctatcagcagttatttatttctgtccatgtctaatctgagtggtggttattctatttaagATGTTAAGAACAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTAATTGTCCAGAAGAGGAGAGCGTCACTCAATGACTTTGACAGGTTCAAGGTTATGTT

upper sequence: GLYMA10G00680.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G140116_T01 (Zea mays), 3'ss of exon 3
--------------------------------------------gttggtacacgttttcatgaagaaattgttattt-tattggaagcatttctttttgttcatcagtttgttttcttgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTCAATGACTTTGATAGGTTCAAGATAATGTT
                                             ||  | ||  || |       | ||  ||     ||   |||   |  |  ||  || |||  ||  | ||||| ||   ||||||| |||| ||  |||||||| || || |||||||  || |||||||| ||||||||||| ||||| |||||||||||||||||||||||  | ||| |
gtaactctagagcttatgttgtggacctctttagcaccgccacactttattcaacttctatattctagatgattgcccataagagaatggtgacacttatttgatctcttgctattctttttt--cagATGTGAAGACCAAGTGGGAGAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGAGCATCGCTCAATGACTTTGATAGGTTCAAAGTCATGCT

upper sequence: GLYMA10G00680.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G028883_T01 (Zea mays), 3'ss of exon 3
gttggtacacgttttcatgaagaaattgttattttattggaagcatttctttttgttcatcagtttgttttcttgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTCAATGACTTTGATAGGTTCAAGATAATGTT
  || |  || | | | || |   ||| || |  || |      || ||| |  |  || |   |  | | ||   ||  ||||||| || | ||  |||||||| || || |||||||  || |||||||| ||||||||||| ||||| |||||||||||||| ||||||||| | |||||
-gtgatttac-tgtccctggactcattctt-taatacttacctgatgtctata-gcccacctcatcctatcctgactg--cagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT

upper sequence: GLYMA10G00680.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G168330_T02 (Zea mays), 3'ss of exon 3
-----------------------------gttggtacacgttttcatgaagaaattgttattttattggaagcatttctttttgttcatcagt-ttgttttcttgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTCAATGACTTTGATAGGTTCAAGATAATGTT
                              |  | | |  | | | | |   |  | |  | |   || |   | |  |     || ||   |  | | || || ||    |||||| ||||  |  ||||| || || || |||||||  || |||||||| ||||||||||||||  | |||| ||||||||| ||||||||| | ||| |
gtaatgatgaacctcatatagtggacctcttcagcaaagttgtgctttattcatctatattctagatgaagataatagtgacaattaattgatgctttgttattcttttttagATGTGAAGACGAAGTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCT

upper sequence: GLYMA10G00680.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
--------gttggtacacgttttcatgaagaaattgttattttattggaagcatttctttttgttcatcagtttg--ttttcttg---ttgaa--------cagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTCAATGACTTTGATAGGTTCAAGATAATGTT
        ||||   ||   |||  |||  |        |||||||||   | ||| || |||||  |  | |||  |  ||||     | ||        ||||||| |||||||  |||||||||||||| ||||| || ||||| |||||||||||||| || ||  |||||||||| ||||| ||||||||||| |||||
gtgagtttgttgtagcatacttt--tgattattcgtaggttttattgg--cctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31471998|gb|CD414026.1|CD414026
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|254326850|gb|GR836459.1|GR836459
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|193555544|gb|FK515989.1|FK515989
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAG
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAG
EST: gi|38193230|gb|CF922436.1|CF922436
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|24136609|gb|BU927119.1|BU927119
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|24135924|gb|BU926434.1|BU926434
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|254315545|gb|GR825354.1|GR825354
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|58014501|gb|CX701243.1|CX701243
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|298178145|gb|HO027528.1|HO027528
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|197664632|gb|FD480335.1|FD480335
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|15337362|gb|BI498018.1|BI498018
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|31305506|gb|CD390709.1|CD390709
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|254326849|gb|GR836458.1|GR836458
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTGATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|7685495|gb|AW756143.1|AW756143
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|38192853|gb|CF922059.1|CF922059
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|298180132|gb|HO025347.1|HO025347
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|31561538|gb|CD487376.1|CD487376
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|254315546|gb|GR825355.1|GR825355
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|192323615|gb|FK017481.1|FK017481
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|17401366|gb|BM178148.1|BM178148
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|254333692|gb|GR848610.1|GR848610
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|58020030|gb|CX706772.1|CX706772
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|21677716|gb|BQ630067.1|BQ630067
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|254314672|gb|GR829665.1|GR829665
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|254314673|gb|GR829666.1|GR829666
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|254333691|gb|GR848609.1|GR848609
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|17963788|gb|BM270533.1|BM270533
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|7146963|gb|AW508885.1|AW508885
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|254314132|gb|GR831761.1|GR831761
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|27446262|gb|CA953385.1|CA953385
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|9564391|gb|BE473900.1|BE473900
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|7589169|gb|AW704949.1|AW704949
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|120533207|gb|EH261340.1|EH261340
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|254345484|gb|GR855874.1|GR855874
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|151397577|gb|EV267450.1|EV267450
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|7685421|gb|AW756069.1|AW756069
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|31471511|gb|CD413539.1|CD413539
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|9987441|gb|BE661549.1|BE661549
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: gi|38193664|gb|CF922870.1|CF922870
EST:     TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG                         ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
genomic: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacac ... tgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttattggaagcatttctttttgttcatcagtttgttttcttgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTCAATGACTTTGATAGGTTCAAGATAATGTT
                                   tttgttttcttgtt  CT-rich tract
                atttcttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttggtacacgttttcatgaagaaattgttattttattggaagcatttctttttgttcatcagtttgttttcttgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTCAATGACTTTGATAGGTTCAAGATAATGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG