1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagacattaaagatcccagcctgccctctctctcactcaaaatcaggattgtgcattttgtaaggctaactatgattttaattcattttaagGTTCTCGGCATCAGTTTTTCACCCAATGGATATCATCTAGCCACGGGTGGTGAAGACAACACTTGTCGGATTTGGGATTTGAGGAAGAAGAAATCCTTTT
species | Glycine max |
transcript | GLYMA10G00300.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCTCCGAACTGGAAGAAGTATCCTTGCACTGGAAGGTCATGTCAAACCG GTTCTCGGCATCAGTTTTTCACCCAATGGATATCATCTAGCCACGGGTGGGEST: gi|51335565|gb|CO979431.1|CO979431
genomic: ACCTCCGAACTGGAAGAAGTATCCTTGCACTGGAAGGTCATGTCAAACCGgtaagacatt ... tcattttaagGTTCTCGGCATCAGTTTTTCACCCAATGGATATCATCTAGCCACGGGT-GG
EST: ACCTCCGAACTGGAAGAAGTATCCTTGCACTGGAAGGTCATGTCAAACCG GTTCTCGGCATCAGTTTTTCACCCAATGGATATCATCTAGCCACGGGTGGTEST: gi|298182242|gb|HO026417.1|HO026417
genomic: ACCTCCGAACTGGAAGAAGTATCCTTGCACTGGAAGGTCATGTCAAACCGgtaagacatt ... tcattttaagGTTCTCGGCATCAGTTTTTCACCCAATGGATATCATCTAGCCACGGGTGGT
EST: ACCTCCGAACTGGAAGAAGTATCCTTGCACTGGAAGGTCATGTCAAACCG GTTCTCGGCATCAGTTTTTCACCCAATGGATATCATCTAGCCACGGGTGGG
genomic: ACCTCCGAACTGGAAGAAGTATCCTTGCACTGGAAGGTCATGTCAAACCGgtaagacatt ... tcattttaagGTTCTCGGCATCAGTTTTTCACCCAATGGATATCATCTAGCCACGGGT-GG
caaaatcaggattgtgcattttgtaaggctaactatgattttaattcattttaagGTTCTCGGCATCAGTTTTTCACCCAATGGATATCATCTAGCCACGGGTGGTGAAGACAACACTTGTCGGATTTGGGATTTGAGGAAGAAGAAATCCTTTT
ttcatttt CT-rich tract
taactatgattttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacattaaagatcccagcctgccctctctctcactcaaaatcaggattgtgcattttgtaaggctaactatgattttaattcattttaagGTTCTCGGCATCAGTTTTTCACCCAATGGATATCATCTAGCCACGGGTGGTGAAGACAACACTTGTCGGATTTGGGATTTGAGGAAGAAGAAATCCTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA