1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggtcaatataaatatacgatcacatacatgtctctgatcaaatgttatatttagctttaccatgtactttgaacttttttctaaaacctatttccttcagGATCGCACACAATTGGACAAGCTCAATGTTCATCTTTCAGAACAAGGATTTACAACGACACCAACATAGATTCCTCTTTTGCAAAATCATTGCAAGGAAA
species | Glycine max |
transcript | GLYMA09G41450.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGAACTGGTTGCTCTTTCAG GATCGCACACAATTGGACAAGCTCAATGTTCATCTTTCAGAACAAGGATTTEST: gi|254321754|gb|GR825071.1|GR825071
genomic: AAGGAACTGGTTGCTCTTTCAGgtaagctagc ... tttccttcagGATCGCACACAATTGGACAAGCTCAATGTTCATCTTTCAGAACAAGGATTT
EST: TTCTTTCTCCAACAAAGGTTTTTCATCTAAGGAACTGGTTGCTCTTTCAG GATCGCACACAATTGGACAAGCTCAATGTTCATCTTTCAGAACAAGGATTT
genomic: TTCTTTCTCCAACAAAGGTTTTTCATCTAAGGAACTGGTTGCTCTTTCAGgtaagctagc ... tttccttcagGATCGCACACAATTGGACAAGCTCAATGTTCATCTTTCAGAACAAGGATTT
tatatttagctttaccatgtactttgaacttttttctaaaacctatttccttcagGATCGCACACAATTGGACAAGCTCAATGTTCATCTTTCAGAACAAGGATTTACAACGACACCAACATAGATTCCTCTTTTGCAAAATCATTGCAAGGAAA
ttctaaa putative branch site (score: 2)
cctatttccttc CT-rich tract
aacttttttctaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcaatataaatatacgatcacatacatgtctctgatcaaatgttatatttagctttaccatgtactttgaacttttttctaaaacctatttccttcagGATCGCACACAATTGGACAAGCTCAATGTTCATCTTTCAGAACAAGGATTTACAACGACACCAACATAGATTCCTCTTTTGCAAAATCATTGCAAGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - cacatac
- - - - - - - - - - - - - - -gtctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtac