1 5' 3' | 2 5' 3' | 3 5' 3' |
...tagaccaggtcacccaaatgatgaaatgaaaaattgtatatttataattacttttacaatgtactatatgttcttctaatatttgtaatatatatttcagGAGGGCACACAATTGGGCAAGCTAAATGTTCAACTTTCAGAACAAGGATTTACAACGAGACCAACATAGATTCCTCTTTTGCAACATCATTGCAGGCAAA
species | Glycine max |
transcript | GLYMA09G41440.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAATTTCCAAAACAAAGGTCTCACCACCGCAGAAATGGTTGCTCTCTCAG GAGGGCACACAATTGGGCACGCTAAATGTTCAACTTTCAGAACAAGGATTTEST: gi|151411350|gb|EV281161.1|EV281161
genomic: TAATTTCCAAAACAAAGGTCTCACCACCGCAGAAATGGTTGCTCTCTCAGgtaattaata ... tatatttcagGAGGGCACACAATTGGGCAAGCTAAATGTTCAACTTTCAGAACAAGGATTT
EST: TAATTTCCAAAACAAAGGTCTCACCACCGCAGAAATGGTTACTCTCTCAG GAGGGCACACAATTGGGCAAGCTAAATGTTCAACTTTCAGAACAAGGATTTEST: gi|192311048|gb|FK004737.1|FK004737
genomic: TAATTTCCAAAACAAAGGTCTCACCACCGCAGAAATGGTTGCTCTCTCAGgtaattaata ... tatatttcagGAGGGCACACAATTGGGCAAGCTAAATGTTCAACTTTCAGAACAAGGATTT
EST: TAATTTCCAAAACAAAGGTCTCACCACCGCAGAAATGGTTGCTCTCTCAG -AGGGCACACAATTGGGCAAGCTAAATGTTCAACTTTCAG
genomic: TAATTTCCAAAACAAAGGTCTCACCACCGCAGAAATGGTTGCTCTCTCAGgtaattaata ... tatatttcagGAGGGCACACAATTGGGCAAGCTAAATGTTCAACTTTCAG
aattacttttacaatgtactatatgttcttctaatatttgtaatatatatttcagGAGGGCACACAATTGGGCAAGCTAAATGTTCAACTTTCAGAACAAGGATTTACAACGAGACCAACATAGATTCCTCTTTTGCAACATCATTGCAGGCAAA
ttctaat putative branch site (score: 2)
tactatatgttcttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaccaggtcacccaaatgatgaaatgaaaaattgtatatttataattacttttacaatgtactatatgttcttctaatatttgtaatatatatttcagGAGGGCACACAATTGGGCAAGCTAAATGTTCAACTTTCAGAACAAGGATTTACAACGAGACCAACATAGATTCCTCTTTTGCAACATCATTGCAGGCAAA
- - ccaggtc
- - - - - -acccaaa
- - - - - - - - - - - - - -gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtac