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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggctttctaaaatgcaaacatttttttatgctatccttgtttttttttttttcatttaggcaattctgttgttttatgagtgtattgtaattttttctaacttcggtttcagATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAG

Basic information

species Glycine max
transcript GLYMA09G41070.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208159468|gb|GD955273.1|GD955273
EST:     TTCTTAAGGCTGAACAGGATGCACAG                         ATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
genomic: TTCTTAAGGCTGAACAGGATGCACAGgttggctttc ... tcggtttcagATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
EST: gi|10709069|gb|BF008793.1|BF008793
EST:     CCATGCAGATGTAGAAAATCCTGTTCTTTAGGCTTGAACAGGATGCACAG                         ATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
genomic: CCATGCAGATGTAGAAAATCCTGTTCTTAAGGC-TGAACAGGATGCACAGgttggctttc ... tcggtttcagATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
EST: gi|27423591|gb|CA935111.1|CA935111
EST:     CCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAG                         ATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
genomic: CCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAGgttggctttc ... tcggtttcagATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
EST: gi|20811827|gb|BQ296305.1|BQ296305
EST:     CCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAG                         ATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
genomic: CCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAGgttggctttc ... tcggtttcagATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
EST: gi|151407222|gb|EV277037.1|EV277037
EST:     AGGCTGAACAGGATGCACAG                         ATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
genomic: AGGCTGAACAGGATGCACAGgttggctttc ... tcggtttcagATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggcaattctgttgttttatgagtgtattgtaattttttctaacttcggtttcagATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAG
                                     ttctaac  putative branch site (score: 1)
                                 ttttttctaacttc  CT-rich tract
                         tattgtaattttttct  TA-rich tract