1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caaatgcagctgcaaagtcaaaatataacactgtctcttgtttcccaattgattactgtgcatgttctgtgtttgaccttccttgccttggccttttcagGTGAAATGGCTAAACAAGCAGCTGTCCAAACTTTGGCCATTTGTGGCAGAT
species | Glycine max |
transcript | GLYMA09G40290.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
caattgattactgtgcatgttctgtgtttgaccttccttgccttggccttttcagGTGAAATGGCTAAACAAGCAGCTGTCCAAACTTTGGCCATTTGTGGCAGAT
gtttgac putative branch site (score: 4)
ccttccttgccttggc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatgcagctgcaaagtcaaaatataacactgtctcttgtttcccaattgattactgtgcatgttctgtgtttgaccttccttgccttggccttttcagGTGAAATGGCTAAACAAGCAGCTGTCCAAACTTTGGCCATTTGTGGCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - cagctgc
- - - - - - - - - - aaatataa
- - - - - - - - - - - - - - - ctgtctc
- - - - - - - - - - - - - - - - - - - -gtttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtttg