Sequence
atgc intronic sequence ATGC exonic sequencegtaagttcttcattgcagctcacttgtgcatatattccaatcttctgcatgcttgtcctttccctaatgcagcaaatgtgccttgcagATGCCTCTTATTTCATTGAAGTGGACAGATTACTTCGTCCTGGTGGATATTTTGTCATCTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATG
Basic information
species | Glycine max |
transcript | GLYMA09G40110.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G40110.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G00740.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagttcttca--ttgcagctcact-----tgtgcatatattccaatcttctgca-tgcttgtcctttccctaatgcagcaaatgtgccttgcagATGCCTCTTATTTCATTGAAGTGGACAGATTACTTCGTCCTGGTGGATATTTTGTCATCTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATG
|| ||| | | || | | || ||| | | | || | | || ||| || | ||| | | | || || || |||||||| |||| ||||| ||||| || || ||||| || ||||| |||||| |||| |||||||| || ||||| || |||||||||||||| ||||||||
gtgagtcccttgggttatatacctctacttatgtacgtgtgttgcggtttttagcagcaattattcttattgtgtt--tggtgatttgtct-gcagATGCAACTTACTTCATCGAAGTAGATAGGTTACTGCGCCCTGGAGGATATCTTGTAATCTCTGGCCCACCTGTACAATGGCCTAAACAAGACAAAGAATG
upper sequence: GLYMA09G40110.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0048g01990.t01 (Vitis vinifera), 3'ss of exon 3
gtaagttcttcattgcagctcacttgtgcatatattccaatcttctgcatgcttgtcctttccct--aatgcagcaaatgtgccttgcagATGCCTCTTATTTCATTGAAGTGGACAGATTACTTCGTCCTGGTGGATATTTTGTCATCTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATG
|| |||||| || ||| | | | || | | |||| | || | ||| | || ||| | | |||||||||| | |||||| |||||||||| | ||||||| || || || || |||| ||||||||||||||||| | ||||||||||||||||| |||||
gtgagttctatat-gcaatgtggctattgaaatttacacttcttacttgtcctcctacttgctctgtaataaaatgttctggatttgcagATGCAACATATTTCCTTGAAGTGGATCGGCTACTTCGACCAGGAGGGTACCTTGTAATCTCTGGTCCCCCTGTACTATGGCCTAAACAAGATAAGGAATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attccaatcttctgcatgcttgtcctttccctaatgcagcaaatgtgccttgcagATGCCTCTTATTTCATTGAAGTGGACAGATTACTTCGTCCTGGTGGATATTTTGTCATCTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATG
ccctaat putative branch site (score: 3)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttcttcattgcagctcacttgtgcatatattccaatcttctgcatgcttgtcctttccctaatgcagcaaatgtgccttgcagATGCCTCTTATTTCATTGAAGTGGACAGATTACTTCGTCCTGGTGGATATTTTGTCATCTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATG
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