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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcgaactctaagaacatttctcctttttttcatctttgttttattttcctaatatcttgttgaatttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG

Basic information

species Glycine max
transcript GLYMA09G40060.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40060.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0048g01890.t01 (Vitis vinifera), 3'ss of exon 3
------gtatgcgaactctaagaacatttctcctttttttcatctttgttttattttcctaatatcttgttgaatttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG
       | |||  | |  | |    |||  |  | || | ||  || || | | || ||||       |||  ||| || |||||||| |||||  || | |||||||||||||||||||||||| | ||||||||||| ||  ||||||||||  ||
gtaaatttttgctgattaaatgtttctttaacaatcttctgattctttttgtgtctttctaaa----cattgtgtttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGGCTTGGTAGGTCAGGCATCTATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336246|gb|GR842425.1|GR842425
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|298179034|gb|HO024769.1|HO024769
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58015330|gb|CX702072.1|CX702072
EST:     AAGTCCAACACCACAGGGGACACCCCTCCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: AAGTCCAACACCACAGGGGACACCCCT-CCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|254343225|gb|GR856929.1|GR856929
EST:     TAAGTCCAACACCACAGGGGACA-CCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|254324273|gb|GR840590.1|GR840590
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|192323627|gb|FK019038.1|FK019038
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|213589574|gb|DB973217.1|DB973217
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|254343224|gb|GR856928.1|GR856928
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|151394416|gb|EV264287.1|EV264287
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|8403460|gb|BE059094.1|BE059094
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|213617944|gb|DB967306.1|DB967306
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTT
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTT
EST: gi|120492016|gb|EH220183.1|EH220183
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|254324274|gb|GR840591.1|GR840591
EST:     AGTCCAACACCCACAGGGGACACCCCTCCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: AGTCCAACA-CCACAGGGGACACCCCT-CCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7686223|gb|AW756934.1|AW756934
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|19348498|gb|BM893030.1|BM893030
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7639927|gb|AW734239.1|AW734239
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|21888536|gb|BQ741749.1|BQ741749
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|19269910|gb|BM886166.1|BM886166
EST:     CCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: CCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|254336245|gb|GR842424.1|GR842424
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|12773457|gb|BG238384.1|BG238384
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTAC
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTAC
EST: gi|27425936|gb|CA937456.1|CA937456
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|23729522|gb|BU762853.1|BU762853
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|48575471|gb|CO036420.1|CO036420
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|19348375|gb|BM892907.1|BM892907
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|14259242|gb|BG882150.1|BG882150
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|254335608|gb|GR847136.1|GR847136
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|23057464|gb|BU578138.1|BU578138
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7691181|gb|AW759313.1|AW759313
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|213607370|gb|DB967079.1|DB967079
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|22932789|gb|BU549928.1|BU549928
EST:     CCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGNNNNNTGATCAATTTGTGTGG
genomic: CCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctttttttcatctttgttttattttcctaatatcttgttgaatttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG
                           tcctaat  putative branch site (score: 2)
                                             tttttttc  putative PPT
     ttttttcatctttgtt  TA-rich tract