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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgatgaagttgggcttgctaatgtatggatacatcattaaaattatattatgtgatttttatgttgtttaccttttatgcccttcagGTTCTTATTGATAACATCAAAGAGTTTGCTCCAATAATCTATACCCCCACAGTTGGGTTAGTGTGTGAAAATTATTCAGGGTTATTTAGACGCCCACGTG

Basic information

species Glycine max
transcript GLYMA09G39870.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39870.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G00570.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagttgatgaagttgggcttgctaatgtatggatacatcattaaaattatattatgtgatttttatgttgtt-taccttttatgcccttcagGTTCTTATTGATAACATCAAAGAGTTTGCTCCAATAATCTATACCCCCACAGTTGGGTTAGTGTGTGAAAATTATTCAGGGTTATTTAGACGCCCACGTG
             ||  | |||  |    | |  ||||      | | | | |       || | |  |   |  || ||  | | | || |||||||||||||||||||||||||| ||||| || || || || || || || |||||  | || ||| | || ||||| || || | |||| | ||| | |
-------------gtgagtctttttggc-tctaaatactgtcccacattgacac------atctctgagacatcataactcatcttctctgcagGTTCTTATTGATAACATCAAAGATTTTGCCCCCATTATATACACTCCTACGGTTGGACTTGTTTGTCAGAACTATTCTGGTTTGTATAGAAGACCAAGAG

upper sequence: GLYMA09G39870.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 3'ss of exon 3
gtgagttgatgaagttgggcttgctaat--gtatggatacatcattaaaattatattatgtgattt--ttatgttgtttaccttttatgcccttcagGTTCTTATTGATAACATCAAAGAGTTTGCTCCAATAATCTATACCCCCACAGTTGGGTTAGTGTGTGAAAATTATTCAGGGTTATTTAGACGCCCACGTG
||  |||   |  || | || | |||    |||    ||   |||| ||    | | || | ||      ||  | || |  | ||||      |||||||||||||||||||||||||| ||||| || ||||| || || ||||||||||| || |||||| |||| || || ||||| |||||||| |||||||
gtaggtttg-gtggtggtgcatactagctggtaatcttagcccatttaagcattttaatctaataaagcaatcctattgatttcttat-----ccagGTTCTTATTGATAACATCAAAGACTTTGCACCGATAATATACACTCCCACAGTTGGATTGGTGTGTCAAAACTACTCGGGGTTGTTTAGACGTCCACGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209711759|gb|BW678941.1|BW678941
EST:     GGAGGATCTTAAATAGATTGCATGACAGGAATGAGATTCTATATTACAGA                         GTTCTTATTGATAACATCAAAGAGTTTGCTCCAATAATCTATACCCCCACA
genomic: GGAGGATCTTAAATAGATTGCATGACAGGAATGAGATTCTATATTACAGAgtgagttgat ... tgcccttcagGTTCTTATTGATAACATCAAAGAGTTTGCTCCAATAATCTATACCCCCACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcattaaaattatattatgtgatttttatgttgtttaccttttatgcccttcagGTTCTTATTGATAACATCAAAGAGTTTGCTCCAATAATCTATACCCCCACAGTTGGGTTAGTGTGTGAAAATTATTCAGGGTTATTTAGACGCCCACGTG
                                      ccttttatgcccttc  CT-rich tract
     taaaattatattatgt  TA-rich tract