Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattgcatataagaagtattgtgtgttcatagaaaataaactgagtattttatattttttgctgatttcaatcctttagacttaaggttttgatttttcccacttctgctcctttcagGAAAAACAATTGCTTGAGATTTGGCAGCTGCTATTGCCTATTGTATATGGCTTTTTAGAAATTGTTGTTCTATCTCAAACATATGTTCATACTCTTGCTG

Basic information

species Glycine max
transcript GLYMA09G39550.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39550.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 8
-------------------------------gtgattgcatataagaagtattgtgtgttcatagaaaataaactgagtattttatattttttgctgatttcaatcctttagacttaaggttttgatttttcccacttctgctcctttcagGAAAAACAATTGCTTGAGATTTGGCAGCTGCTATTGCCTATTGTATATGGCTTTTTAGAAATTGTTGTTCTATCTCAAACATATGTTCATACTCTTGCTG
                                   |||  ||  |    |||| |||| ||  || |   | |   |  | | |  ||| |||  | |  |  |      |||| |   ||| | | |||    |  | ||||| |||||||| ||| ||||||||||||| | ||||||||||||||||||  |||||||  || |||||| ||||||||||||||| || ||||| |  |||||||  |
gtattgattacttcatgtcatgtttatgacccacgttgagtaagatgtatattatgtgctccaagtaggaacaacaatgaatattgattattttatcacgttgagatagcagacct--tgttctaactttaat-atctatgctc-tttcagGACAAAGAATTGCTTGAGATCTTGCAGCTGCTATTGCCTATCATATATGGTGTTATAGAAACTGTTGTTCTATCTCAGACGTATGTACGCACTCTTGTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttcaatcctttagacttaaggttttgatttttcccacttctgctcctttcagGAAAAACAATTGCTTGAGATTTGGCAGCTGCTATTGCCTATTGTATATGGCTTTTTAGAAATTGTTGTTCTATCTCAAACATATGTTCATACTCTTGCTG
                        ttttgatttttcccac  CT-rich tract
                        ttttgattttt  TA-rich tract