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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caatactgatagaatatcttatcatatattctatcattagctataagaataactgtgtcggtgtgtctggtctgatcatctgggatgacattaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG

Basic information

species Glycine max
transcript GLYMA09G39370.4
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298176485|gb|HO026720.1|HO026720
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|151393517|gb|EV263392.1|EV263392
EST:     CCTTCCATTGGATTTATCAACAAGTTCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|254327210|gb|GR836819.1|GR836819
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|192294831|gb|FG987520.1|FG987520
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|151395834|gb|EV265711.1|EV265711
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGACGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|298193444|gb|HO033878.1|HO033878
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|298195504|gb|HO043895.1|HO043895
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|254327211|gb|GR836820.1|GR836820
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|7924716|gb|AW830742.1|AW830742
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|17020964|gb|BM091998.1|BM091998
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|298191356|gb|HO038835.1|HO038835
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|21285429|gb|BQ473300.1|BQ473300
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaataactgtgtcggtgtgtctggtctgatcatctgggatgacattaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG
                                          acattaattt  TA-rich tract