1 5' 3' | 2 5' 3' | 3 5' 3' |
...attttactgatatccagtattagaaccacataagttaaaccaaaacctcctgtgtttttatgtagctgaaatccaataactgttgtttgattttttacagATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACAAGAGATTTCCAAGGTGTGAACCCCAACAGCTTTGATGGGCATGGGAACT
species | Glycine max |
transcript | GLYMA09G39130.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGATCAGGGAAGGTCAACCACTTGGGATTTCTGTGACACTAAGAGGAAAT ATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACAEST: gi|193717293|gb|FK650833.1|FK650833
genomic: AGATCAGGGAAGGTCAACCACTTGGGATTTCTGTGACACTAAGAGGAAATgtgagcatgt ... ttttttacagATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACA
EST: AGATCAGGGAAGGTCAACCACTTGGGATTTCTGTGACACTAAGAGGAAAT ATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACAEST: gi|208195816|gb|GD994419.1|GD994419
genomic: AGATCAGGGAAGGTCAACCACTTGGGATTTCTGTGACACTAAGAGGAAATgtgagcatgt ... ttttttacagATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACA
EST: AGATCAGGGAAGGTCAACCACTTGGGATTTCTGTGACACTAAGAGGAAAT ATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACAEST: gi|193645436|gb|FK590838.1|FK590838
genomic: AGATCAGGGAAGGTCAACCACTTGGGATTTCTGTGACACTAAGAGGAAATgtgagcatgt ... ttttttacagATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACA
EST: GATCAGGGAAGGTCAACCACTTAGGGATTTCTGTGACACTAAGAGGAAAT ATGATGTAACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACEST: gi|7795199|gb|AW780596.1|AW780596
genomic: GATCAGGGAAGGTCAACCACTT-GGGATTTCTGTGACACTAAGAGGAAATgtgagcatgt ... ttttttacagATGATGT-ACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGAC
EST: AGATCAGGGAAGGTCAACCACTTGGGATTTCTGTGACACTAAGAGGAAAT ATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACA
genomic: AGATCAGGGAAGGTCAACCACTTGGGATTTCTGTGACACTAAGAGGAAATgtgagcatgt ... ttttttacagATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACA
cctcctgtgtttttatgtagctgaaatccaataactgttgtttgattttttacagATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACAAGAGATTTCCAAGGTGTGAACCCCAACAGCTTTGATGGGCATGGGAACT
ttttttac CT-rich tract
ttgtttgatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttactgatatccagtattagaaccacataagttaaaccaaaacctcctgtgtttttatgtagctgaaatccaataactgttgtttgattttttacagATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACAAGAGATTTCCAAGGTGTGAACCCCAACAGCTTTGATGGGCATGGGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - -aaccaca
- - - - - - - - - - - - - - - - - - - accaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgttg