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gtcagtttggagtgtttgagataagttggttttatgtcaattgcttccaatgagttgttaaatcgttgtccttgcactatgtagGCTATAAGGGAGGGGGCTGATGCCGTCATTGCTGTTGGAGGTGATGGAACTCTTCATGAG
species | Glycine max |
transcript | GLYMA09G39010.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCATGCTTATTTGACATAACGAGAGAG GCTATAAGGGAGGGGGCTGATGCCGTCATTGCTGTTGGAGGTGATGGAACTEST: gi|16997162|gb|BM086534.1|BM086534
genomic: TGTCATGC-TA-TTGACATAACGAGAGAGgtcagtttgg ... cactatgtagGCTATAAGGGAGGGGGCTGATGCCGTCATTGCTGTTGGAGGTGATGGAACT
EST: GTGAATCCATAACGTCAGGTCCTTGTCATGCTATTGACATAACGAGAGAG GCTATAAGGGAGGGGGCTGATGCCGTCATTGCTGTTGGAGGTGATGGAACTEST: gi|193397875|gb|FK363769.1|FK363769
genomic: GTGAATCCATAACGTCAGGTCCTTGTCATGCTATTGACATAACGAGAGAGgtcagtttgg ... cactatgtagGCTATAAGGGAGGGGGCTGATGCCGTCATTGCTGTTGGAGGTGATGGAACT
EST: GTGAATCCATAACGTCAGGTCCTTGTCATGCTATTGACATAACGAGAGAG GCTATAAGGGAGGGGGCTGATGCCGTCATTGCTGTTGGAGGTGATGGAACT
genomic: GTGAATCCATAACGTCAGGTCCTTGTCATGCTATTGACATAACGAGAGAGgtcagtttgg ... cactatgtagGCTATAAGGGAGGGGGCTGATGCCGTCATTGCTGTTGGAGGTGATGGAACT
ttttatgtcaattgcttccaatgagttgttaaatcgttgtccttgcactatgtagGCTATAAGGGAGGGGGCTGATGCCGTCATTGCTGTTGGAGGTGATGGAACTCTTCATGAG
tccttgc CT-rich tract
ttgttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtttggagtgtttgagataagttggttttatgtcaattgcttccaatgagttgttaaatcgttgtccttgcactatgtagGCTATAAGGGAGGGGGCTGATGCCGTCATTGCTGTTGGAGGTGATGGAACTCTTCATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA