1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagtcttgattgagtccttgttatgtaaggtttgcccgtggcaatgattttgcaagatgtgatgattgttttgttttgcttgcagACAGATGAGGTGCTTGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAAGCTGATCAATATG
species | Glycine max |
transcript | GLYMA09G38430.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGACGATGCGAAAGCGGCTATTGCAATTTCGGTCTCTGAAGTTACTCAA ACAGATGAGGTGCTTGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAAEST: gi|8282927|gb|BE020488.1|BE020488
genomic: ACGACGATGCGAAAGCGGCTATTGCAATTTCGGTCTCTGAAGTTACTCAAgtgagtcttg ... ttgcttgcagACAGATGAGGTGCTTGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAA
EST: ACGACGATGCGAAAGCGGCTATTGCAATNTCGGTCTCTGAAGTTACTCAN ACAGATGAGGTGCTTGAGTTGTCGAAGCANATCANAGAGAAATTGAAAGAAEST: gi|254336538|gb|GR842717.1|GR842717
genomic: ACGACGATGCGAAAGCGGCTATTGCAATTTCGGTCTCTGAAGTTACTCAAgtgagtcttg ... ttgcttgcagACAGATGAGGTGCTTGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAA
EST: GCAATTTCGGTCTCTGAAGTTACTCAA ACAGATGAGGTGCTTGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAAEST: gi|193324067|gb|FK288777.1|FK288777
genomic: GCAATTTCGGTCTCTGAAGTTACTCAAgtgagtcttg ... ttgcttgcagACAGATGAGGTGCTTGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAA
EST: GACGATGCGAAAGCGGCTATTGCAATTTCGGTCTCTGAAGTTACTCAA ACAGATGAGGTGCTTGAGTTGTCGAAGCAGATCAAAGAGAAATTGAAAGAA
genomic: GACGATGCGAAAGCGGCTATTGCAATTTCGGTCTCTGAAGTTACTCAAgtgagtcttg ... ttgcttgcagACAGATGAGGTGCTTGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAA
tttgcccgtggcaatgattttgcaagatgtgatgattgttttgttttgcttgcagACAGATGAGGTGCTTGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAAGCTGATCAATATG
ttttgtttt CT-rich tract
aatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcttgattgagtccttgttatgtaaggtttgcccgtggcaatgattttgcaagatgtgatgattgttttgttttgcttgcagACAGATGAGGTGCTTGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAAGCTGATCAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT