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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttttttttccttcctatactatatgttgagttctgtaatggtattgaatgtctacttatttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG

Basic information

species Glycine max
transcript GLYMA09G36870.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36870.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g16660.1 (Oryza sativa), 3'ss of exon 5
---------------------------gtaggtttttttttccttcct-atactatatgttgagttctgtaatggtattgaat-gtctacttatttcgcttttttatttca---ttagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG
                            || |||||  |        | ||| | || |||   || || |||| ||||   | || ||   ||    |  || ||||| |   | ||||| | ||||| |||||||| ||||| |||||||| |||||||||||||| ||| |||| ||||| |||||||||   ||
gtcagttctttgcacatggtttctatcttatgttttagtgagaacaatgatagtgta-gttttcttttgcaatgttattttttcgtttagcaataagacacttatattttactttcagATTTTGCAAGAGGAAATTGGTGGTGTAAAAGGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG

upper sequence: GLYMA09G36870.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os08g21660.2 (Oryza sativa), 3'ss of exon 5
---------------gtaggtttttttttccttcctat-----------actatatgttgagttctgtaatggtat---tgaatgtctacttatttcgcttttttatt--tcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG
                ||| ||   | ||   |  ||            |   | || | |  | |  || | |||   |   |||  |   ||     || | ||||  || ||||||| | ||||| |||||||| ||||| |||||||| |||||||||||||| ||  |||| ||||| ||||||||    ||
gtcagttcttcgcacatagtttccatcttatgttttagtgagaacaatgatcgtgtggttatcttttcaaagttatattttgctgttcaagaatgagagttctatatttttctttagATTTTGCAAGAGGAAATTGGTGGTGTTAAAGGCCATTTTGGACCAATTAACGCGCTGGCATTTAATCCTGATGGGCGGAG

upper sequence: GLYMA09G36870.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G143330_T01 (Zea mays), 3'ss of exon 5
----------------------gtaggtttttttttccttcctatactatatgttg--agttctgtaatggtattgaatgtctac--ttatttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG
                       ||  |   ||  || ||  | |  || || |||  |  | || |    ||    || |  ||  |||||        ||  |   ||||||| | ||||| |||||||| ||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||    ||
gtgatttttcagttcacagaatataaatgccttactctttt-tgtgttacatcttgctaactttgcatgcttacaatatttgaaccattattattaaaacttgctcttttagATTTTGCAAGAGGAAATTGGTGGTGTTAAAGGGCATTTTGGGCCAATTAATGCTTTGGCATTTAATCCTGATGGGCGGAG

upper sequence: GLYMA09G36870.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G028834_T03 (Zea mays), 3'ss of exon 5
----------------------------------gtaggtttttttttccttcctatactatatgttgagttctgtaatggtattgaatgtctacttatttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG
                                   |   |  |||| |  | | |      ||  |||   |   ||    | |||||  | | || |||     ||  | | |  ||||||| | ||||| |||||||| ||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||    ||
gtaatttctttttcagttaataaattatcaaggcattactccttttgtgttacttccttgctaacttggtatacttacaatttttgaac-tgttctgattaaaacttgctctctt-ttagATTTTGCAAGAGGAAATTGGTGGTGTTAAAGGACATTTTGGGCCAATTAATGCTTTGGCATTTAATCCTGATGGGCGGAG

upper sequence: GLYMA09G36870.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G46280.3 (Arabidopsis thaliana), 3'ss of exon 5
-------------gtaggtttttttttccttcctatactatatgttgagttctgtaatggtattgaatgtctacttatttcgcttttttatttcat---tagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG
              || |  | |||| | |    | | | ||   ||     |  |    | || |||  |    |||     | |||  | | ||   |||||||| ||||| |||||||| ||||||||||| || |||||||| || ||||| ||||| || || |||||||| || ||
gttagtgtttataataagagtgttttacttggaaaca-tgtaacctggaaaatacacatat-ttaaataaccgtgtatcattgtgtttggtataatatatagATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTATAAATGCTTTGGCATTCAATCCTGATGGGAAGAG

upper sequence: GLYMA09G36870.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g06630.t01 (Vitis vinifera), 3'ss of exon 6
---gtaggtttttttttccttcc-tatac-tatatgt-tgagt-tctgtaatggtattgaatgtctactta--tttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG
    ||| | | | | |   ||  | |   | | ||| || || | |||||   | |||   |  || |||  ||    |  |  |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||| || || || |||||||||||||| ||
gtaatagatatctatatatatctgtgtgtgtgtgtgtgtgtgtgtgtgtaa-actgttgttgggttaattaaattatattcctgcatttgattagATTCTTCAAGAAGAAATTGGAGGTGTGAAAGGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAG

upper sequence: GLYMA09G36870.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S65_136V6.1 (Physcomitrella patens), 3'ss of exon 5
---------------gtaggt-ttttttttccttcctatactatatgttgagttctgtaatggt-attgaatgtctacttatttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG
               | |||  || || ||   |  | |||| | | |      ||| || ||| | ||||  ||  | |       ||  | || ||   ||||| || | ||||| |||||||||||||| || ||||||||||| || |||||  |||||||||| || || || | |||
gctaagttgatgtttgcaggcattcttcttagcttgtttact-tctttattccactgcaaaggtcactgaa--tccgcgttcacgatttcctgatgtctgcagATTTTTGAGGAAGAGATTGGGGGTGTGAAGGGTCACTTTGGACCTATAAATGCCCTGGCTTTTAATCCGGACGGTAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193484988|gb|FK452912.1|FK452912
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208278980|gb|GE076617.1|GE076617
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACCTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193670465|gb|FK610349.1|FK610349
EST:     AGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: AGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193566289|gb|FK524092.1|FK524092
EST:     AAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: AAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193731634|gb|FK665404.1|FK665404
EST:     TCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: TCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193388295|gb|FK356148.1|FK356148
EST:     CAACTACCGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAACTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193557140|gb|FK512783.1|FK512783
EST:     AAATTCGAAGCCAAATTCTTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
genomic: AAATTCGAAGCCAAATTC-TTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
EST: gi|208083497|gb|GD883097.1|GD883097
EST:     AACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGAACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
genomic: AACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTG-ACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
EST: gi|193566501|gb|FK522460.1|FK522460
EST:     GGCAAATTCGAAGCCTAAATTTCTTTTGTACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
genomic: GGCAAATTCGAAGCC-AAA-TTC-TTTG-ACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
EST: gi|7639005|gb|AW733337.1|AW733337
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193527517|gb|FK484279.1|FK484279
EST:     AAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATT-GGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: AAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193328964|gb|FK295208.1|FK295208
EST:     GTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATT-GGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: GTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208211572|gb|GE011359.1|GE011359
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193402616|gb|FK368114.1|FK368114
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAA
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAA
EST: gi|193306883|gb|FK269785.1|FK269785
EST:     GAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATT-GGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: GAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208184959|gb|GD981165.1|GD981165
EST:     CGAAGCCAAATTCTTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
genomic: CGAAGCCAAATTC-TTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
EST: gi|193524469|gb|FK483096.1|FK483096
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208156644|gb|GD957220.1|GD957220
EST:     GGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: GGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193699811|gb|FK641694.1|FK641694
EST:     AAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: AAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208072846|gb|GD871103.1|GD871103
EST:     CAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|207790777|gb|GD761914.1|GD761914
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|207715870|gb|GD699318.1|GD699318
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193565006|gb|FK520149.1|FK520149
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGCGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208194170|gb|GD989875.1|GD989875
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTCCAAGAAGAAATTGGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATT-GGGGGTGTGAAAGGCCACTTTGGACCAATTAA
EST: gi|193512979|gb|FK470527.1|FK470527
EST:     AATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: AATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193698005|gb|FK635744.1|FK635744
EST:     TGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTCGGACCAATTAAT
genomic: TGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193328386|gb|FK295961.1|FK295961
EST:     TTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: TTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193674611|gb|FK618207.1|FK618207
EST:     AAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: AAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193718641|gb|FK652611.1|FK652611
EST:     AAATTCGAAGCCAAATTTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: AAATTCGAAGCCAAA-TTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208180232|gb|GD973689.1|GD973689
EST:     CAACTACTGATCATCGTGCCGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208260054|gb|GE057634.1|GE057634
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTT
EST: gi|208150384|gb|GD946957.1|GD946957
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTAGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208190072|gb|GD994472.1|GD994472
EST:     TGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: TGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|207763969|gb|GD738848.1|GD738848
EST:     GAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: GAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208217980|gb|GE018714.1|GE018714
EST:     TGATCATCGTTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: TGATCATCG-TGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193682833|gb|FK623861.1|FK623861
EST:     AAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
genomic: AAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTC-TTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
EST: gi|207792455|gb|GD765061.1|GD765061
EST:     CCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193324290|gb|FK288832.1|FK288832
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|120495908|gb|EH224075.1|EH224075
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193408268|gb|FK371866.1|FK371866
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|120495980|gb|EH224147.1|EH224147
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208279826|gb|GE078456.1|GE078456
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTA
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTA
EST: gi|193638200|gb|FK586694.1|FK586694
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATCCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGT
EST: gi|193540903|gb|FK496065.1|FK496065
EST:     AAATTCGAAGCCAAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: AAATTCGAAGCC-AAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|207760801|gb|GD734124.1|GD734124
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193370522|gb|FK334088.1|FK334088
EST:     CTGGCAAATTCGTAAGTCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CTGGCAAATTCG-AAG-CCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208080480|gb|GD877214.1|GD877214
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208152267|gb|GD947454.1|GD947454
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGGAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|298193520|gb|HO034126.1|HO034126
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208102732|gb|GD897473.1|GD897473
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193478465|gb|FK447100.1|FK447100
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193631237|gb|FK583698.1|FK583698
EST:     AAATTCGAAGCCAAATTCTTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
genomic: AAATTCGAAGCCAAATTC-TTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
EST: gi|207725767|gb|GD700985.1|GD700985
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|57575042|gb|CX548017.1|CX548017
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|207774965|gb|GD748525.1|GD748525
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAAT
EST: gi|207705762|gb|GD686838.1|GD686838
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208312177|gb|GE109917.1|GE109917
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTG
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTG
EST: gi|208163697|gb|GD963253.1|GD963253
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208267602|gb|GE065181.1|GE065181
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|58016949|gb|CX703691.1|CX703691
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193465837|gb|FK433750.1|FK433750
EST:     CAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|120495225|gb|EH223392.1|EH223392
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193557315|gb|FK514386.1|FK514386
EST:     TGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: TGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208331393|gb|GE128970.1|GE128970
EST:     AATTCTTTGACAAG                         T
genomic: AATTCTTTGACAAGgtaggttttt ... atttcattag-
EST: gi|208331393|gb|GE128970.1|GE128970
EST:     AATTCTTTGACAAG                         T
genomic: AATTCTTTGACAAGgtaggttttt ... atttcattag-
EST: gi|120495784|gb|EH223951.1|EH223951
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|207795405|gb|GD766360.1|GD766360
EST:     GAAGCCAAATTCTTTGACTAAG                         ATTCTTCAAGAAGAAATT-GGGGTGTGAAAGGCCACTTTGGACCAATTAA
genomic: GAAGCCAAATTCTTTGAC-AAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
EST: gi|207848141|gb|GD819670.1|GD819670
EST:     TCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: TCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagttctgtaatggtattgaatgtctacttatttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG
                             cttatttcgctttttt  CT-rich tract
                                       ttttttatttcatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggtttttttttccttcctatactatatgttgagttctgtaatggtattgaatgtctacttatttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA