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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttttttttccttcctatactatatgttgagttctgtaatggtattgaatgtctacttatttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTAT

Basic information

species Glycine max
transcript GLYMA09G36870.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36870.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g16660.1 (Oryza sativa), 3'ss of exon 5
---------------------------gtaggtttttttttccttcct-atactatatgttgagttctgtaatggtattgaat-gtctacttatttcgcttttttatttca---ttagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTAT
                            || |||||  |        | ||| | || |||   || || |||| ||||   | || ||   ||    |  || ||||| |   | ||||| | ||||| |||||||| ||||| |||||||| |||||||||||||| ||| |||| ||||| |||||||||   ||    
gtcagttctttgcacatggtttctatcttatgttttagtgagaacaatgatagtgta-gttttcttttgcaatgttattttttcgtttagcaataagacacttatattttactttcagATTTTGCAAGAGGAAATTGGTGGTGTAAAAGGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG----

upper sequence: GLYMA09G36870.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os08g21660.2 (Oryza sativa), 3'ss of exon 5
---------------gtaggtttttttttccttcctat-----------actatatgttgagttctgtaatggtat---tgaatgtctacttatttcgcttttttatt--tcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTAT
                ||| ||   | ||   |  ||            |   | || | |  | |  || | |||   |   |||  |   ||     || | ||||  || ||||||| | ||||| |||||||| ||||| |||||||| |||||||||||||| ||  |||| ||||| ||||||||    ||    
gtcagttcttcgcacatagtttccatcttatgttttagtgagaacaatgatcgtgtggttatcttttcaaagttatattttgctgttcaagaatgagagttctatatttttctttagATTTTGCAAGAGGAAATTGGTGGTGTTAAAGGCCATTTTGGACCAATTAACGCGCTGGCATTTAATCCTGATGGGCGGAG----

upper sequence: GLYMA09G36870.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G143330_T01 (Zea mays), 3'ss of exon 5
----------------------gtaggtttttttttccttcctatactatatgttg--agttctgtaatggtattgaatgtctac--ttatttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTAT
                       ||  |   ||  || ||  | |  || || |||  |  | || |    ||    || |  ||  |||||        ||  |   ||||||| | ||||| |||||||| ||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||    ||    
gtgatttttcagttcacagaatataaatgccttactctttt-tgtgttacatcttgctaactttgcatgcttacaatatttgaaccattattattaaaacttgctcttttagATTTTGCAAGAGGAAATTGGTGGTGTTAAAGGGCATTTTGGGCCAATTAATGCTTTGGCATTTAATCCTGATGGGCGGAG----

upper sequence: GLYMA09G36870.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G028834_T03 (Zea mays), 3'ss of exon 5
----------------------------------gtaggtttttttttccttcctatactatatgttgagttctgtaatggtattgaatgtctacttatttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTAT
                                   |   |  |||| |  | | |      ||  |||   |   ||    | |||||  | | || |||     ||  | | |  ||||||| | ||||| |||||||| ||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||    ||    
gtaatttctttttcagttaataaattatcaaggcattactccttttgtgttacttccttgctaacttggtatacttacaatttttgaac-tgttctgattaaaacttgctctctt-ttagATTTTGCAAGAGGAAATTGGTGGTGTTAAAGGACATTTTGGGCCAATTAATGCTTTGGCATTTAATCCTGATGGGCGGAG----

upper sequence: GLYMA09G36870.2 (Glycine max), 3'ss of exon 3
lower sequence: AT2G46280.3 (Arabidopsis thaliana), 3'ss of exon 5
-------------gtaggtttttttttccttcctatactatatgttgagttctgtaatggtattgaatgtctacttatttcgcttttttatttcat---tagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTAT
              || |  | |||| | |    | | | ||   ||     |  |    | || |||  |    |||     | |||  | | ||   |||||||| ||||| |||||||| ||||||||||| || |||||||| || ||||| ||||| || || |||||||| || ||    
gttagtgtttataataagagtgttttacttggaaaca-tgtaacctggaaaatacacatat-ttaaataaccgtgtatcattgtgtttggtataatatatagATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTATAAATGCTTTGGCATTCAATCCTGATGGGAAGAG----

upper sequence: GLYMA09G36870.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g06630.t01 (Vitis vinifera), 3'ss of exon 6
---gtaggtttttttttccttcc-tatac-tatatgt-tgagt-tctgtaatggtattgaatgtctactta--tttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTAT
    ||| | | | | |   ||  | |   | | ||| || || | |||||   | |||   |  || |||  ||    |  |  |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||| || || || |||||||||||||| ||    
gtaatagatatctatatatatctgtgtgtgtgtgtgtgtgtgtgtgtgtaa-actgttgttgggttaattaaattatattcctgcatttgattagATTCTTCAAGAAGAAATTGGAGGTGTGAAAGGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAG----

upper sequence: GLYMA09G36870.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S65_136V6.1 (Physcomitrella patens), 3'ss of exon 5
---------------gtaggt-ttttttttccttcctatactatatgttgagttctgtaatggt-attgaatgtctacttatttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTAT
               | |||  || || ||   |  | |||| | | |      ||| || ||| | |||||  |  | |       ||  | || ||   ||||| || | ||||| |||||||||||||| || ||||||||||| || |||||  |||||||||| || || || | |||    
gctaagttgatgtttgcaggcattcttcttagcttgtttact-tctttattccactgcaaaggtcactgaat--ccgcgttcacgatttcctgatgtctgcagATTTTTGAGGAAGAGATTGGGGGTGTGAAGGGTCACTTTGGACCTATAAATGCCCTGGCTTTTAATCCGGACGGTAGAAG----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193638200|gb|FK586694.1|FK586694
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATCCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGT
EST: gi|208048194|gb|GD845333.1|GD845333
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193306883|gb|FK269785.1|FK269785
EST:     GAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATT-GGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: GAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193682833|gb|FK623861.1|FK623861
EST:     AAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
genomic: AAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTC-TTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
EST: gi|208182074|gb|GD979429.1|GD979429
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAAGAAAGAAATTGGGGGTGTG
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAA-GAA-GAAATTGGGGGTGTG
EST: gi|58016949|gb|CX703691.1|CX703691
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|298193520|gb|HO034126.1|HO034126
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193631237|gb|FK583698.1|FK583698
EST:     AAATTCGAAGCCAAATTCTTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
genomic: AAATTCGAAGCCAAATTC-TTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
EST: gi|193328386|gb|FK295961.1|FK295961
EST:     TTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: TTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193527517|gb|FK484279.1|FK484279
EST:     AAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATT-GGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: AAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|207705762|gb|GD686838.1|GD686838
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208080480|gb|GD877214.1|GD877214
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208150384|gb|GD946957.1|GD946957
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTAGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208312177|gb|GE109917.1|GE109917
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTG
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTG
EST: gi|208279826|gb|GE078456.1|GE078456
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTA
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTA
EST: gi|193681622|gb|FK624562.1|FK624562
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGGAATTGGGGGTGTGAAAGGCCACTTTGGAACCAATTAA
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGA-CCAATTAA
EST: gi|193327480|gb|FK297267.1|FK297267
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|120495908|gb|EH224075.1|EH224075
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|207760801|gb|GD734124.1|GD734124
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193566289|gb|FK524092.1|FK524092
EST:     AAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: AAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|207692197|gb|GD675374.1|GD675374
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGAACCAAATTA
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGA-CCAA-TTA
EST: gi|193324290|gb|FK288832.1|FK288832
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|207715870|gb|GD699318.1|GD699318
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208102732|gb|GD897473.1|GD897473
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|207774647|gb|GD747171.1|GD747171
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAAGAAATTGGGGGTGTGAAAAGGACCACTTTGGACCAATT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAA-GAAATTGGGGGTGTGAAA-GG-CCACTTTGGACCAATT
EST: gi|193402616|gb|FK368114.1|FK368114
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAA
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAA
EST: gi|207763969|gb|GD738848.1|GD738848
EST:     GAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: GAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208195173|gb|GD990416.1|GD990416
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208211572|gb|GE011359.1|GE011359
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208173875|gb|GD967248.1|GD967248
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAGG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208267602|gb|GE065181.1|GE065181
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193512979|gb|FK470527.1|FK470527
EST:     AATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: AATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193674611|gb|FK618207.1|FK618207
EST:     AAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: AAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193484988|gb|FK452912.1|FK452912
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208245409|gb|GE048831.1|GE048831
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGAACCAAATTA
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGA-CCAA-TTA
EST: gi|193363261|gb|FK326211.1|FK326211
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGG-TGTGAAAGGCC
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCC
EST: gi|208260054|gb|GE057634.1|GE057634
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTT
EST: gi|120495980|gb|EH224147.1|EH224147
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193567404|gb|FK522845.1|FK522845
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGAACCAATTAA
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGA-CCAATTAA
EST: gi|120495784|gb|EH223951.1|EH223951
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|57575042|gb|CX548017.1|CX548017
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|208184959|gb|GD981165.1|GD981165
EST:     CGAAGCCAAATTCTTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
genomic: CGAAGCCAAATTC-TTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
EST: gi|120495225|gb|EH223392.1|EH223392
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|207790777|gb|GD761914.1|GD761914
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|7639005|gb|AW733337.1|AW733337
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193408268|gb|FK371866.1|FK371866
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193699811|gb|FK641694.1|FK641694
EST:     AAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: AAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|193465837|gb|FK433750.1|FK433750
EST:     CAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
EST: gi|207774965|gb|GD748525.1|GD748525
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGgtaggttttt ... atttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagttctgtaatggtattgaatgtctacttatttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTAT
                             cttatttcgctttttt  CT-rich tract
                                       ttttttatttcatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggtttttttttccttcctatactatatgttgagttctgtaatggtattgaatgtctacttatttcgcttttttatttcattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA