1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taatatctactactgtactattcttagtggcgctttcctgcctagccttttctttttcttgttggatcaaaatcatgattgctaggggatatggttgtagTCCATTACAGGGCATGGGCTGAGAAATCAGAACACAAGTTTGAAGACACATGGCTGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAG
species | Glycine max |
transcript | GLYMA09G36250.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATTAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCT TCCATTACAGGGCATGGGCTGAGAAATCAGAACACAAGTTTGAAGACACATEST: gi|151402485|gb|EV272298.1|EV272298
genomic: CATTAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCTgtaagtacca ... atggttgtagTCCATTACAGGGCATGGGCTGAGAAATCAGAACACAAGTTTGAAGACACAT
EST: ATTAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTTGCTTCT TCCATTACAGGGCATGGGCTGAGAAATCAGAACACAAGTTTGAAGACACAEST: gi|23054744|gb|BU577634.1|BU577634
genomic: ATTAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTT-GCTTCTgtaagtacca ... atggttgtagTCCATTACAGGGCATGGGCTGAGAAATCAGAACACAAGTTTGAAGACACA
EST: TAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCT TCCATTACAGGGCATGGGCTGAGAAATCAGAACACAAGTTTGAAGACACAT
genomic: TAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCTgtaagtacca ... atggttgtagTCCATTACAGGGCATGGGCTGAGAAATCAGAACACAAGTTTGAAGACACAT
ccttttctttttcttgttggatcaaaatcatgattgctaggggatatggttgtagTCCATTACAGGGCATGGGCTGAGAAATCAGAACACAAGTTTGAAGACACATGGCTGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAG
tttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatatctactactgtactattcttagtggcgctttcctgcctagccttttctttttcttgttggatcaaaatcatgattgctaggggatatggttgtagTCCATTACAGGGCATGGGCTGAGAAATCAGAACACAAGTTTGAAGACACATGGCTGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - actactg
- - - - - - - - - - - cttagtg
- - - - - - - - - - - - - - - -gctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgc