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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgattagttctttacttgtttggcgttacttcttttaagaatgagaggtgatgcaatgtgtcaattttatgataagattcttgtctatcttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAAAACACCAGACCGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTA

Basic information

species Glycine max
transcript GLYMA09G36160.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36160.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0064g00450.t01 (Vitis vinifera), 3'ss of exon 3
-tatgattagttctttacttgtttggcgttacttcttttaagaatgagaggtgatgcaatgtgtcaattttatgataagattcttgtctatcttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAAAACACCAGACCGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTA
   |  ||||||   |  |  ||||   | |  |||   | | |       | || | |      | |||  || | |  |  |    ||| |  || ||||  | || || |||||||| ||||| |||||||||||| ||||||||| | | ||    |  || ||    |||||||||||  | ||||||||||| ||
tgctttttagttgaattttattttgctatgatgtctcacatgtaacgattataataccagacactactttcttgttgatctcatgaattatgt-atttcagGATTAAATGGACAGTCAAATAAGAGGCTTATTTCTATGAATGAAGTTAAACAGCATAGAATGGAAGGTTCCATGTGGACTGTTCTGAAAGGCCGTGTATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207683805|gb|GD665108.1|GD665108
EST:     ACATCCTGACCTTGCAG                         GTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
genomic: ACATCCTGACCTTGCAGgttctcatac ... cttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
EST: gi|151400158|gb|EV269972.1|EV269972
EST:     TAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAG                         GTCTGAA-GGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
genomic: TAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGgttctcatac ... cttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
EST: gi|213620256|gb|DB961401.1|DB961401
EST:     TAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAG                         GTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
genomic: TAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGgttctcatac ... cttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
EST: gi|298174703|gb|HO014734.1|HO014734
EST:     TAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAG                         GTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
genomic: TAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGgttctcatac ... cttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
EST: gi|298171261|gb|HO016293.1|HO016293
EST:     TAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAG                         GTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
genomic: TAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGgttctcatac ... cttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaggtgatgcaatgtgtcaattttatgataagattcttgtctatcttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAAAACACCAGACCGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTA
                                  ttcttgtctatctt  CT-rich tract
                   aattttatgataagat  TA-rich tract