Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaagcatttatttattataaaatgaaaatatgcaaaacaagaggagttctgttgttagatatgtttttgatattatgtattttttatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGATCATCGTCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA

Basic information

species Glycine max
transcript GLYMA09G34760.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34760.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G48960.1 (Arabidopsis thaliana), 3'ss of exon 2
ttaagcatttatttattataaaatgaaaatatgcaaaacaagaggagttctgtt----gttagatatgtttttgatattatgtattttttatattatgcca----tagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGATCATCGTCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
           ||| | |||         | | ||  |      | ||| ||||    ||| |||||  |||  ||  | | |  ||| |   |  ||  |    ||||| || || || ||||| ||| | || || || || |||||| ||||||| |||| |||||||||||| ||||||||  || | ||| | || || ||||
----------gtttgtaatatctctctgttcttcattagcttttgtgttttgtttcttgttggatatcgtttaaattgttttttctttctgattgttgataaatttagGCTGCTGGTATCCCCAAGAAGTTGGCTCCTACAATCGGTATTTCTGTTGACCATCATCGCAAGAACCGGTCTTTGGAGGGTTTTCAAACCAACGTCCAGA

upper sequence: GLYMA09G34760.2 (Glycine max), 3'ss of exon 3
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 3'ss of exon 3
---ttaagcatttatttattataaaatgaaaatatgcaaaacaagaggagttctgttgttagatatgtttttgatattatgtattttttatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGATCATCGTCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
   |  |   || | || ||  |   |  || | | |          ||    | ||   |   | | |  |  |    ||  || ||| | || |    ||||  || || || || || ||| | || ||||| || || ||| |||||||||| || ||||||||||||||||||||  |||| ||  | ||||| || |
gtttggattcttgaatttttcaatgttctaagtgttctctctttataga----tattaagatgaaagctcatagttgcttgc-ttctttttgtttttttttagGTTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCTGTTGATCACCGACGCAAGAACCGTTCTTTGGAGGGTCTTCAGTCCAATGTCCAAA

upper sequence: GLYMA09G34760.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 3
-ttaagcatttatttattataaaatgaaaatatgcaaaacaagaggagttctgttgttagatatgtttttga-tatt-atgtattttttatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGATCATCGTCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
 |   |   || || |||  ||| ||     ||        |     | | |  ||||  || | ||  |||  ||| || |  || ||  ||||    |||||| || || || || || ||| | || || || || |||||||||||||| ||||||||||||||||| ||||||||  |||| ||| | ||||| ||||
ttgttgtgattgttgattg-aaattggctggatttttctttactatcggtatcatgtttcatttcttgctgaacattgatctgattgtttgattaa--tatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACCATCGTCGCAAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGA

upper sequence: GLYMA09G34760.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 3
--ttaag---catttatttattataaaatgaaaatatgcaaaacaagaggagttctgttgttagatatgtttttgatattatgtattttttatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGATCATCGTCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
  ||  |   ||||  ||| | | ||  |     |||| ||  | |  |    | | ||  || | |  | |   | ||| |  ||  |      ||      |||  ||||| ||||| ||||| ||||| || ||||| ||||||||||||||||||||||||| |||||| ||  | |||||||| ||||||||||| || |
tttttggtctcattgctttttgacaacctattgttatggaatcccatgg----tttatt-ctatacaaatctccaaaattttacatgctcctctgtacattccagGTGGCAGGTATTCCAAAAAAACTTGCTCCGACCATTGGTATTGCTGTTGATCATCGTCGCAGGAACCGATCACTAGAAAGTCTCCAAGCTAATGTCCAAA

upper sequence: GLYMA09G34760.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 3'ss of exon 3
-ttaagcatttat--ttattataaaatgaaaatatgcaaaacaagaggagttctgttgttagatatgtttttgatattatgtattttttatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGATCATCGTCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
 |    |  | |   || ||  | | | |   | | | | |     ||  || |||  ||     |   |  | | || ||     |  || |  ||    |||| || || || || || ||||||||||| ||||| ||||| ||||||||||| |||||||| || || |   |||||||||| || |  |||||  |  
gtagcactgtcagggtttttggacagtcattgtcttctacattcatggcattgtgtaatt---cctccctcggtttttctgacgactacatgtcttgaaccagGCTGCCGGTATCCCAAAGAAGCTTGCACCCACCATCGGTATCGCTGTTGATCACCGTCGCAAAAATCGATGCCTGGAAAGTCTTCAGGAGAATGTCAACC

upper sequence: GLYMA09G34760.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 3'ss of exon 3
ttaagcatttatttattataaaatgaaaatatgcaaaacaagaggagttctg----ttgttagatatgtttttgatattatgtattttttatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGATCATCGTCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
   |  ||  | ||  | ||   |   |   | |     | || || || ||    || ||   |  ||| ||   |  |        ||  ||| | |  ||||| || || || || || |||||||| || || || |||||||||||||| ||||| |||||||| || | |||||| ||||| || |  ||  |  |  
--catgatgaacttggtgtagggttccacctttcttggtacgatgatttatggttttttttgtctgggttgttctgacgacaatcaaattgaattttac--tagGCTGCTGGCATCCCGAAGAAGCTTGCTCCCACTATTGGTATTGCTGTTGACCATCGCCGCAAGAATCGATGTTTGGAGAGTCTTCAGGAGAACATCAATC

upper sequence: GLYMA09G34760.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 3'ss of exon 3
----------------------------------------------------------ttaagcatttatttattataaaatgaaaatatgcaaaacaagagg-----agttctgttgtta----------------gatatgtttttgat----attatgtattttttatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGATCATCGTCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
                                                          ||||    | |  ||  ||  ||    | |     |    |  ||     ||||  || |||                 |||||  | ||| |    ||||| || |||||   ||  ||  ||||| |||||  ||||||| ||||||||||| ||||| ||||||||||| || ||| | ||||||||||| |  ||||| ||||| ||||  || ||  |  
gtacttaacacgtttacatgggatttttcatcttgcttgtatcgagtcccgctacgcgttaaatgatgaactagaatggaaccgcatttgaggaggtgatcggttcccagttgagtcgttcattgaggtagatgtgtgatatactcttggtgagcattat-tactttttcatttcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACCATAGACGCAAGAACCGATGCTTGGAGAGTCTTCAAGAAAACGTTAACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17021889|gb|BM092923.1|BM092923
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|9203646|gb|BE329870.1|BE329870
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|31457787|gb|CD399815.1|CD399815
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|6072539|gb|AW101926.1|AW101926
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|193403719|gb|FK365675.1|FK365675
EST:     AAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTACCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGA
genomic: AAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATT-CCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGA
EST: gi|58022980|gb|CX709721.1|CX709721
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|209716856|gb|BW679608.1|BW679608
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|192310330|gb|FK002210.1|FK002210
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|192304778|gb|FG998794.1|FG998794
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|10232707|gb|BE801595.1|BE801595
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|192304777|gb|FG998793.1|FG998793
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|26049048|gb|CA785501.1|CA785501
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|209714112|gb|BW679439.1|BW679439
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|298174123|gb|HO017459.1|HO017459
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|15337650|gb|BI498306.1|BI498306
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|4396384|gb|AI495381.1|AI495381
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|151412589|gb|EV282401.1|EV282401
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTACACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|192314938|gb|FK010756.1|FK010756
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|21677416|gb|BQ629767.1|BQ629767
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|192296167|gb|FG989752.1|FG989752
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|58014722|gb|CX701464.1|CX701464
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|21994666|gb|BQ786194.1|BQ786194
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|4313307|gb|AI460426.1|AI460426
EST:     CAACATGAAAGTGAGAGGTGGAAGNGGGATTT-CTCTTGAAGA-CTCAAG                         GCAGCAGGGATTCCCAAANAGCTTG
genomic: CAACATGAAAGTGAGAGGTGGAAG-GGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTG
EST: gi|21994589|gb|BQ786117.1|BQ786117
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|151412263|gb|EV282075.1|EV282075
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|192324141|gb|FK017872.1|FK017872
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGTTTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|26269105|gb|CA820168.1|CA820168
EST:     GGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: GGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|31307515|gb|CD392718.1|CD392718
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|58014623|gb|CX701365.1|CX701365
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|209707172|gb|BW656790.1|BW656790
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|13787384|gb|BG649976.1|BG649976
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|22931795|gb|BU548934.1|BU548934
EST:     TGAAAGTGAGAGGTGGAAGGGGATTTNNNCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: TGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|7588772|gb|AW704560.1|AW704560
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|209719729|gb|BW669236.1|BW669236
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|192301798|gb|FG994450.1|FG994450
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|151411721|gb|EV281532.1|EV281532
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|208145647|gb|GD942740.1|GD942740
EST:     ACAACATGAAAGAGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATT
EST: gi|12688109|gb|BG154445.1|BG154445
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|5058358|gb|AI736834.1|AI736834
EST:     TGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: TGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|14991504|gb|BI317177.1|BI317177
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|18730580|gb|BM525958.1|BM525958
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|209706115|gb|BW680859.1|BW680859
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|13311686|gb|BG405337.1|BG405337
EST:     ACAACATGAAAGTGAGAGGTGGNAGGG-ATTTTCTCTTGAAGAACTCAAG                         GCANCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|151393189|gb|EV263064.1|EV263064
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|7232690|gb|AW568044.1|AW568044
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|9902923|gb|BE611891.1|BE611891
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|13481580|gb|BG510923.1|BG510923
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|9898907|gb|BE607875.1|BE607875
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|9899177|gb|BE608204.1|BE608204
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|213614480|gb|DB972804.1|DB972804
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|13311622|gb|BG405273.1|BG405273
EST:     ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
EST: gi|151412501|gb|EV282313.1|EV282313
EST:     ACAACATGAAGGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGGTGGAAGGGGATTTTCTCTTGAAGAACTCAAGgtaaaacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttctgttgttagatatgtttttgatattatgtattttttatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGATCATCGTCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
                    ttttgat  putative branch site (score: 4)
          ttagatatgtttttga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttaagcatttatttattataaaatgaaaatatgcaaaacaagaggagttctgttgttagatatgtttttgatattatgtattttttatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACCATAGGTATTGCTGTTGATCATCGTCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT