1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttgaagcagagtttgtagtagtccatctcatttatggttagtttctatttatcttcaaatgtgatattatttaatgcactattttttgtgatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATA
species | Glycine max |
transcript | GLYMA09G34310.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTEST: gi|11413942|gb|BF426017.1|BF426017
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCT
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTG GATCTGGGATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|193321297|gb|FK283627.1|FK283627
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|19269301|gb|BM885557.1|BM885557
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|17518751|gb|BM187793.1|BM187793
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|208073599|gb|GD872780.1|GD872780
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTG GATCTGGCATTTGATEST: gi|254334177|gb|GR849095.1|GR849095
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGAT
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|193706525|gb|FK643624.1|FK643624
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTEST: gi|298190509|gb|HO032630.1|HO032630
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCT
EST: CACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|19053931|gb|BM732598.1|BM732598
genomic: CACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|8402724|gb|BE058358.1|BE058358
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: GGAATCTCTCTCAGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
genomic: GGAATCTCTCTCAGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
ctatttatcttcaaatgtgatattatttaatgcactattttttgtgatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATA
atttaat putative branch site (score: 4)
atattatttaatgcac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgaagcagagtttgtagtagtccatctcatttatggttagtttctatttatcttcaaatgtgatattatttaatgcactattttttgtgatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT