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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttattggaacagtcttttgctggcattaatggcttatcgttttcattattgtcaagattggattttggttcatccagctcccttattttttagGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAGTCCCCAGGCTCACCCTTATATGTGGGGTGTCCAG

Basic information

species Glycine max
transcript GLYMA09G34170.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34170.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G35530.1 (Arabidopsis thaliana), 3'ss of exon 3
gtttttattggaacagtcttttgctggcattaatggcttatcgttttcattattgtcaagattggattttggttcatccagctcccttattttttagGCATATTCTCCTATACCTCCAC---ATGGTTTCTTGGCATCAAGTCCCCAGGCTCACCCTTATATGTGGGGTGTCCAG
       || | ||||  |  |     |||  |||| |   || | || ||  |      ||| ||| ||      | | |||  ||| ||    |||||||||||||||| || || |   ||||||   ||||||| ||||||||  ||||||||||||||||||| || |||
------gttaggacagattcct----ccatctatggatctgcgctctcttttcttgttgcatttgatctt------tacggctttctt-ttcgacagGCATATTCTCCTATGCCGCCGCCTCATGGTTATGTGGCATCTAGTCCCCAACCTCACCCTTATATGTGGGGAGTTCAG

upper sequence: GLYMA09G34170.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 3
gtttttattggaacagtctttt-gctggcattaatggcttatcgtt-----ttcattattgtc----aagattggattttggttcatccagctcccttatttttta-----gGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAGTCCCCAGGCTCACCCTTATATGTGGGGTGTCCAG
|||  | | |  | |   |    |||   | ||| || ||  | ||     ||  ||||||||    ||   |  || | | || |   |  |   ||  ||||||     |||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||
gttcctttagtcaaaacttaaaagcttatactaagggttttccattgttgctttcttattgtcttttaattgtttatgtggcttgacttaattttttttatttttattacagGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482300|gb|AW201569.1|AW201569
EST:     CTTCGACCACCGGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAG                         GCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAGTCCCCAGGCT
genomic: CTTCGACCACCGGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAGgtttttattg ... tattttttagGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAGTCCCCAGGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttcattattgtcaagattggattttggttcatccagctcccttattttttagGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAGTCCCCAGGCTCACCCTTATATGTGGGGTGTCCAG
                                       ctcccttatttttt  CT-rich tract
                                            ttatttttta  TA-rich tract