1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttcttttggtgagcaattgtacttctggctcctgagtgtttttgtttctaatttatcttgcttatgcatacaattcttacaatatcttctggcttgcagCTATACAGCCAGTGAAGTAGACATTAGTTCTGATAAGACTCCAGAACAGCGTGCCCTTCTTGTTGAATCCAGAAG
species | Glycine max |
transcript | GLYMA09G33950.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGGAAACAGCTTACACTCCTTTTGTTCCACAAGGAGCTCTTCCATCCAG CTATACAGCCAGTGAAGTAGACATTAGTTCTGATAAGACTCCAGAACAGCGEST: gi|254315438|gb|GR825247.1|GR825247
genomic: AGGGAAACAGCTTACACTCCTTTTGTTCCACAAGGAGCTCTTCCATCCAGgtgataataa ... tggcttgcagCTATACAGCCAGTGAAGTAGACATTAGTTCTGATAAGACTCCAGAACAGCG
EST: AGCTCTCCCATCCAG CTATACAGCCAGTGAAGTAGACATTAGTTCTGATAAGACTCCAGAACAGCG
genomic: AGCTCTTCCATCCAGgtgataataa ... tggcttgcagCTATACAGCCAGTGAAGTAGACATTAGTTCTGATAAGACTCCAGAACAGCG
tttctaatttatcttgcttatgcatacaattcttacaatatcttctggcttgcagCTATACAGCCAGTGAAGTAGACATTAGTTCTGATAAGACTCCAGAACAGCGTGCCCTTCTTGTTGAATCCAGAAG
ttcttac putative branch site (score: 2)
tatcttct putative PPT
aattcttacaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttttggtgagcaattgtacttctggctcctgagtgtttttgtttctaatttatcttgcttatgcatacaattcttacaatatcttctggcttgcagCTATACAGCCAGTGAAGTAGACATTAGTTCTGATAAGACTCCAGAACAGCGTGCCCTTCTTGTTGAATCCAGAAG
- - -tttggtg
- - - - - - - - - - -acttctg
- - - - - - - - - - - - - - -ctcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcataca