1 5' 3' | 2 5' 3' | 3 5' 3' |
gtagaaaattctctctctgcatattattcaaatagctattatgcaaaatctaatcttgcatgttgcagGTTGCTACTTCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGAGATCTCAGGAGGATTCGCAGACTAAAGTTTTGGCCGCTAAGCAAACTGTTGG
species | Glycine max |
transcript | GLYMA09G33020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAG GTTGCTACTTCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGAGATEST: gi|192311967|gb|FK004248.1|FK004248
genomic: GATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGgtagaaaatt ... catgttgcagGTTGCTACTTCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGAGAT
EST: GATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAG GTTGCTACTTCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGAGATEST: gi|192319503|gb|FK009485.1|FK009485
genomic: GATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGgtagaaaatt ... catgttgcagGTTGCTACTTCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGAGAT
EST: GATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAG GTTGCTACTTCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGAGATEST: gi|192311966|gb|FK004247.1|FK004247
genomic: GATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGgtagaaaatt ... catgttgcagGTTGCTACTTCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGAGAT
EST: GATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAG GTTGCTACTTCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGAGAT
genomic: GATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGgtagaaaatt ... catgttgcagGTTGCTACTTCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGAGAT
tctctgcatattattcaaatagctattatgcaaaatctaatcttgcatgttgcagGTTGCTACTTCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGAGATCTCAGGAGGATTCGCAGACTAAAGTTTTGGCCGCTAAGCAAACTGTTGG
atctaat putative branch site (score: 3)
atattattcaaatagc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaaaattctctctctgcatattattcaaatagctattatgcaaaatctaatcttgcatgttgcagGTTGCTACTTCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGAGATCTCAGGAGGATTCGCAGACTAAAGTTTTGGCCGCTAAGCAAACTGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA